Report for 5758.m00083

 > 5758.m00083, length: 1779, copies: 1 

MVIVVELVVARATEQGESGEGRRLRDAAEVMPAHGSTGEEDASRADRLAICKLGQAWPSTNADAQNMHIFTPMNT

SLLRCGMGAYLLTWGSLSLVLLSVLQSSMMYMSSGCFTEERAALMDIKSSLTRANSMVVLDSWGQGDDCCVWELV

VCENSTRRISHLHLSGIYYPPISTPSDRWHLNLSVFSAFHELQFLDLSWNYPSSLSFDGLVGLKKLQYLDFTYCS

LEGSFPVFNGEFGALEVLVLNHNHLNRGLSAQAFQNLQNLRQLNLSLNHFGGELPTWLFELPHLKILDLSNNLFE

GSIPTSSSLKPFALEILDLSHNHLSGELPTAVLKNIRSLNLRGNQFQGSLPASLFALPQLKFLDLSQNSFDGHIP

TRTSSEPLLLEVLNLQNNRMSGSLCLWSERAFGNLQNLRELYLSSNQFSGSLPTFLFSLPHIELLDLSANLLEGP

IPISISSNLSLSLKNIRFSQNNLSGTFPFIWLRNLTKLEEIDFSGNPNLAVDINFPGWIPPFQLKRLVLSSCELD

KSTLSEPYFLHTQHHLKVLDLSDNHLTGNMPNWLFTKETALVRLNLGNNLLTGSFAPVSNNELSGLIFDGVNNLS

IISQLYLDNNKFEGTIPHNLSGQLKIIDLHGNRLSGKLDASFWNLSSLRALNLADNHITGEIHPQICKLTGIVLL

DLSNNNLTGSIPDFSCTSELRFLNLSRNYLSGNLSESYFNTSNLIALDITYNQFTGNLNWVGYLGNTRLLSLAGN

NFEGQITPNLCKLQYLRIIDFSHNKLSGSLPACIGGLSLIGRANDQTLQPIFETISDFYDTRYSLRGFNFATKGH

LYTYGGNFFISMSGIDLSANMLDGEIPWQLGNLSHIRSLNLSYNFFTGQIPATFASMNEIESLDLSHNNLSGPIP

WQLTQLASLGAFSVAYNNLSGCIPNYGQLSSFSIDSYLGNDNLHKISQGKRCSPSPGAVAKEDVGERVDPFSAYR

VCITMQSYTQKGDVEVVCDGKEWDIVVDGDKFNLIALTDEIKEHFEWGTNQKASMLYLDSTGQYLPLTSDAALRS

LVDSNFLFREISVLVRVEDIVEVADADGNGNANCNGGDGPGGDGSGGDGSGADVNGGDGNDGDGNVVVGEKEMQQ

KASSKWQAMFWDDTPISNPEYPEDEPIGVNEEHLYGVVDLQSQKKGTSGKKTDKEGSSGNEVATQDVPNDFDPQH

VPEEEVPVDEIGIAVPLFVHNRENPTFVVDATFPNGEAFKLAMRQFAIKGEFEVNVSHSSKARYIAKCAKTKDCT

WRIYARKETKSSVWKISRLSEIHTCATTSKLSGKMASSGWIADRAKDIMTTEPNIGPKALQDRLEKKYNVTLRSG

RTWEGLQKAKDDIHGSWEASFQLLWSFKAEIERSMPGSIVDINVNAMGEKWHMQFLTRKNYENWEWFMQRLKQAV

VEYRECFRHLMLNFSKKFRGEVFDSNMWPAAWTFSLYKYQEYMDQIKEACPAAYEYLEVHHPHTWTRSKFSEACK

IEYVCNNLAESFNAWISDIKGLPIIDLVNKLKQMIMKQMSRRKIVAEGLIGKILPSVVRALNAKSRGLNYEIARS

GLTDAEVTVFDMKTKKHNTYGVFLEKGASLEDYVGEFFSVDRFKLAYASSIVPMSDKTQWPKVDIGFKMLPPKLG

RSARRPQKNRVPNSAEGKGKGKRKRCSRCQGFGHQARTCKEPEWVDPSDLASAPAPPKRKKRKTKPTVVVVSKPQ

TRSKSKCDASSSSQPLPTSPSHPAGVVSTSQPPTRTTPPRLAKTKARTAGVRPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	239	263	0.45
LRR [Pfam ls]	264	287	5.3
LRR [Pfam ls]	288	310	0.19
LRR [Pfam ls]	313	334	0.6
LRR [Pfam ls]	335	358	0.031
LRR [Pfam ls]	412	435	0.028
LRR [Pfam ls]	436	460	7.2
LRR [Pfam ls]	462	486	2.6
LRR [Pfam ls]	540	564	0.094
LRR [Pfam ls]	565	587	7.1
LRR [Pfam ls]	623	646	0.088
LRR [Pfam ls]	647	670	0.062
LRR [Pfam ls]	671	693	0.038
LRR [Pfam ls]	694	718	1.9
LRR [Pfam ls]	741	764	5
LRR [Pfam ls]	765	788	0.48
LRR [Pfam ls]	860	883	0.1
LRR [Pfam ls]	884	904	0.56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	191	214	6.4
LRR [sensitive, ls]	191	214	130
LRR [sensitive, ls]	215	237	0.74
LRR [sensitive, ls]	215	237	15
LRR [sensitive, ls]	239	263	0.022
LRR [sensitive, ls]	239	263	0.45
LRR [sensitive, ls]	264	287	0.26
LRR [sensitive, ls]	264	287	5.3
LRR [sensitive, ls]	288	310	0.0096
LRR [sensitive, ls]	288	310	0.19
LRR [sensitive, ls]	313	334	0.03
LRR [sensitive, ls]	313	334	0.6
LRR [sensitive, ls]	335	358	0.0016
LRR [sensitive, ls]	335	358	0.031
LRR [sensitive, ls]	359	382	1.1
LRR [sensitive, ls]	359	382	22
LRR [sensitive, ls]	384	408	4.3
LRR [sensitive, ls]	384	408	87
LRR [sensitive, ls]	412	435	0.0014
LRR [sensitive, ls]	412	435	0.028
LRR [sensitive, ls]	436	460	0.36
LRR [sensitive, ls]	436	460	7.2
LRR [sensitive, ls]	462	486	0.13
LRR [sensitive, ls]	462	486	2.6
LRR [sensitive, ls]	487	509	3
LRR [sensitive, ls]	487	509	60
LRR [sensitive, ls]	513	538	2.2
LRR [sensitive, ls]	513	538	43
LRR [sensitive, ls]	540	564	0.0047
LRR [sensitive, ls]	540	564	0.094
LRR [sensitive, ls]	565	587	0.35
LRR [sensitive, ls]	565	587	7.1
LRR [sensitive, ls]	601	621	1.6
LRR [sensitive, ls]	601	621	33
LRR [sensitive, ls]	623	646	0.0044
LRR [sensitive, ls]	623	646	0.088
LRR [sensitive, ls]	647	670	0.0031
LRR [sensitive, ls]	647	670	0.062
LRR [sensitive, ls]	671	693	0.0019
LRR [sensitive, ls]	671	693	0.038
LRR [sensitive, ls]	694	718	0.096
LRR [sensitive, ls]	694	718	1.9
LRR [sensitive, ls]	741	764	0.25
LRR [sensitive, ls]	741	764	5
LRR [sensitive, ls]	765	788	0.024
LRR [sensitive, ls]	765	788	0.48
LRR [sensitive, ls]	836	859	1.5
LRR [sensitive, ls]	836	859	31
LRR [sensitive, ls]	860	883	0.005
LRR [sensitive, ls]	860	883	0.1
LRR [sensitive, ls]	884	904	0.028
LRR [sensitive, ls]	884	904	0.56
MuDR family transposase [ls]	1203	1360	4e-11
MuDR family transposase [fs]	1228	1360	2.1e-14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	114	778	3e-46
Cf-9 [L. pimpinellifolium]	137	952	1e-76
FLS2 [A.thaliana]	191	708	2e-47
Xa21 [O. sativa]	197	688	1e-30
FLS2 [A.thaliana]	226	943	2e-67
Xa21 [O. sativa]	253	759	4e-43
Xa21 [O. sativa]	267	781	1e-37
Xa21 [O. sativa]	311	943	2e-44
CLV2 [A. thaliana]	336	996	5e-50
Xa21 [O. sativa]	435	924	2e-36
Xa21 [O. sativa]	585	942	5e-36
FLS2 [A.thaliana]	621	924	1e-26
FLS2 [A.thaliana]	650	925	3e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
MuDR family transposase	1203	1360	3.3e-11
Zinc knuckle	1674	1691	0.0028

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	77	99	in -> out

Report for 5758.m00083

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)