Report for 5763.m00121

 > 5763.m00121, length: 1532, copies: 1 

MSTNQIHDIMKRVYNMHGGNIDNLPKAPNNVQHPQPRDRSMDTGIIVARWVVGKALNPVLDGLVEAWAASQKLGP

NVDALKMELLYARAMLNNVRGREIHNTDLNELLQKLRDLAYNADDVLDELDYFRIQDELNDTSEAAAEHAKGCVS

DLFLNAHHTAKAAGKLLGFSSSCSSCATNNGPGDSITAACCGSPHNTIHAIGKRLCFSTSLVDDCDHDYGCVHDE

RDHVKGKSTPKLKFDRVGLSKKMKIIVEQLQPVCAKVTAILNLELMGSHLSIESSTAKSRPITTPTSIEPTLYGR

DAVMKRIIDSITQGTCCEEYLTVLPIIGPGGIGKTTLIQHIYNSQQVQNHFQIMVWTCVSQSFNVDKLIEEIKEK

LPSVEGEKKGSAEELIVQRLKSKRFLFILDDIWKCESDDWKRLLVPLRKGQTKGNIIIVTTRFLVVTETVKTSDN

KIQLEGIDDEAFWELFLAYVFGPEKSKNDKDLLCIGKDIVKKLKGSPLAAKTVGKLLSNHLDRVHWMRVLDSKEW

ELQAGDHDIMPALKLSYDYLPFHLQQCFSYCALFPEDYKFNNKELIRFWIGLDILHSESQNKAFEDIALSNIDSL

VSHGFFKREETDGHPCYIIHDLLHNLALKVASLECVSLHSSNVKSVEIRPSIRHLSIITDGANDTDGITDENFKS

ELIKLKKRLKVENVQTLMIFGEVDKSFIGCFHDLFKEASALRVLYLPKMPFAVGSILDEFTTLVHLRYLRLGTTI

GNNFHLPINLSKFYHLRILDLEKWDNCFQLPGDISNLAKLHNFLVPGYPIHSNISNVGKLQFLQELKGFQVNRKD

VGFELKQLGYLMELRELRIDNLEKVHTKEEAAEAKLLSKTRLRKLELNWKQGRTSTNAFNEDQILEKLQPHSSLQ

ELSIHGHGGSSCPKWLGTELSVKFLETFRLKNVVWNILPPLGEVFLVGGPGEESIGQKTSQNFRSLKRLELVKLP

NLRKWVAKEIFPTFFSVLEVLIVRKCNELAELPFSYHTYCTSEEDVKATCFPRLRELEIHNCPKIVSLPPIPYTQ

TLCSVNITDVGTGLESLVYSSKSSKLEIKGNKDLKVLDDNVLASRNLHKLQNLTIEGFPPLEERHLQMLTSLKRF

SLFSSSIAFNPTVERSDVEWRLSIENLMIQDWNGSGKELTQLLFHLPKLSLLSLGGCRKKTLLSVALTQQQTSAQ

VESTQVTASNHRQQQKAEDLDLLEEEEVTQLDVDGEDEDDDRLLLTNSLEQLWIVNYKELILVSHPLPIGHHNKE

EEGTGGGWGLQALCSLRQLGITGCPLLLSAYEAPACLFPSSLQYLQITGPMEGVQMLDLSNLTSLTKLFIEDCGE

YLRKGLLPLLAQGQLSNLIVYKTYGLFAGVLDSILRGAQEEQEQLHLLEHSSKLRVLETDDLAGILVKPICRLLS

SSLTNLTLQGNSEVERFTNEQEEALQLLTFLQDLKFIHYDKLRCLPAGLHRLTNLKRLMIMNCPSIQSLPKDGLP

GSLKYFIVRDNEKLVKQCKKLKKTNPEIELIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	280	585	4.8e-67
NB-ARC [Pfam ls]	280	585	1.4e-67
LRR [Pfam ls]	1028	1050	6.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	632	656	3.1
LRR [sensitive, ls]	632	656	63
LRR [sensitive, ls]	1028	1050	0.3
LRR [sensitive, ls]	1028	1050	6.1
LRR [sensitive, ls]	1427	1451	5.7
LRR [sensitive, ls]	1427	1451	120
LRR [sensitive, ls]	1479	1500	0.51
LRR [sensitive, ls]	1479	1500	10

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	49	1504	1e-130
RPM1 [A. thaliana]	235	1008	1e-40
RPS2 [A. thaliana]	258	1009	6e-31
I2 [L. esculentum]	270	1348	5e-81
Pib [Oryza sativa].	292	814	9e-24
Pi-ta [Oryza sativa]	292	772	8e-22
Mla1 [Hordeum vulgare].	297	844	4e-32
M [L. usitatissimum]	321	1119	9e-12
Xa1 [Oryza sativa]	1239	1524	8e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5763.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)