Report for 5766.m00070

 > 5766.m00070, length: 645, copies: 1 

MRHCWGGASSVLRLLLALQCGVVVVVLQCSANALGSDVSALIAFKRAIIEDPRSALADWSDADGNACDWHGVICS

SPQGSVISLKLSNSSLKGFIAPELGQLSFLQELYLDRNMLFGTIPKQLGSLRNLRVLDLGVNRLTGPIPPELAGL

SSVSVINFHSNGLTGNIPSELGKLQNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCL

QDEYSVRQRAFQICISGSPAGQRGGVKGFKHPTSDHKHERSPQPTWLLVLEISTGILLLVFVITGAITASRSCKL

KPSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSRQELEVACEDFSNIIGSSPETVVYKGTMKDGPEVSVISLC

AFEGHWTSQHELFYQNKVIDLARLNHENIAKFLGYCRESDPFSRMLVFEYASNGTLFEHLHSDGEGAQLSWLRRM

KIAIGIAQGLRYLHTELQPPFAISELNSNSVYVTEDFTPKLVDFECWKMMFTKQKHEKAPGRINNKSSFPGHLDS

SEDKQADIQGNTFAFGVILLEIISGRLPYCKDKGYLIDWAIKYLQQTEEIGKLVDPELTNVRTEDLEVICSVVSR

CIDPDPSKRPSMQIITGVLENEIDLSAAAILKESSLAWAELALAL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	104	127	1.6
LRR [Pfam ls]	128	151	0.054
LRR [Pfam ls]	152	175	6.1
Ser/Thr pkinase [Pfam ls]	344	619	3.1e-10
Ser/Thr pkinase [Pfam fs]	396	464	2.5e-12
Ser/Thr pkinase [Pfam fs]	539	613	0.0027

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	80	103	0.82
LRR [sensitive, ls]	80	103	16
LRR [sensitive, ls]	104	127	0.078
LRR [sensitive, ls]	104	127	1.6
LRR [sensitive, ls]	128	151	0.0027
LRR [sensitive, ls]	128	151	0.054
LRR [sensitive, ls]	152	175	0.3
LRR [sensitive, ls]	152	175	6.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	37	215	3e-17
FLS2 [A.thaliana]	37	212	2e-20
Xa21 [O. sativa]	37	209	3e-24
Xa21 [O. sativa]	67	209	7e-12
FLS2 [A.thaliana]	71	620	1e-35
FLS2 [A.thaliana]	79	215	2e-11
FLS2 [A.thaliana]	80	209	6e-12
Xa21 [O. sativa]	80	210	7e-12
CLV2 [A. thaliana]	81	222	9e-11
FLS2 [A.thaliana]	83	215	1e-11
Xa21 [O. sativa]	83	438	1e-12
FLS2 [A.thaliana]	84	223	6e-14
Pto [L. esculentum]	337	630	2e-21
Rpg1 [Hordeum vulgare]	347	556	5e-13
Rpg1 [Hordeum vulgare]	348	621	6e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	271	293	in -> out

Report for 5766.m00070

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)