Report for 5767.m00115

 > 5767.m00115, length: 480, copies: 1 

MAAASGHNARLLALALALLLAALHLHGVVCDPSHTHFAMVSRNAPSWRPDRGGQGKVSAPSLDTCGCGPAPAPAD

PLKSASLDKCGCPPAPAPSPEDFLNENLQALYPVIQAFKATITSDPRGVTASWVGPNLCDSYFGGDMYKGFYCEH

PPAPPGATTPKDNTTLTIASIDFNGYGLGAPSLSGFVDAFPDLALFHANSNNFSGEVPDLTGLPYFYELDLSNNN

FSGAFPATVVPLGRLLFLDLRFNRFVGTVPPPVFDLTVVALFLNNNGFYGNIPDNFGSTTAEYLVVANNQFTGPI

PRSIYNTSANLSEVLFLNNHLSGCLPYEIGLVEGLTVFDAGGNDITGPIPLSLGCLGLVEELNLAGNQLYGHIPD

VLCALAKTGKLQNLSLSDNYFHSVGRRHCLELVRSKVLDVRLNCIPNFPHQRPALECARFYADPPQHCPFVPHIP

CDLPGFRPPAAALPSAVAAEEGGGGGGGGN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	239	262	9.2
LRR [Pfam ls]	358	381	8.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	192	214	2.4
LRR [sensitive, ls]	192	214	49
LRR [sensitive, ls]	215	238	2.4
LRR [sensitive, ls]	215	238	49
LRR [sensitive, ls]	239	262	0.45
LRR [sensitive, ls]	239	262	9.2
LRR [sensitive, ls]	285	308	3.6
LRR [sensitive, ls]	285	308	73
LRR [sensitive, ls]	334	357	0.65
LRR [sensitive, ls]	334	357	13
LRR [sensitive, ls]	358	381	0.4
LRR [sensitive, ls]	358	381	8.1
LRR [sensitive, ls]	385	408	0.77
LRR [sensitive, ls]	385	408	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	95	374	3e-19
FLS2 [A.thaliana]	104	400	5e-19
CLV2 [A. thaliana]	132	396	5e-20
CLV2 [A. thaliana]	160	397	1e-11
CLV2 [A. thaliana]	166	396	7e-15
Xa21 [O. sativa]	168	394	4e-18
Cf-9 [L. pimpinellifolium]	171	397	2e-11
Xa21 [O. sativa]	182	420	2e-15
FLS2 [A.thaliana]	185	430	9e-21
FLS2 [A.thaliana]	192	397	1e-14
FLS2 [A.thaliana]	193	393	4e-18
Cf-9 [L. pimpinellifolium]	200	418	5e-14
Xa21 [O. sativa]	200	391	2e-16
FLS2 [A.thaliana]	201	374	3e-15
FLS2 [A.thaliana]	208	417	5e-17
Xa21 [O. sativa]	239	375	6e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 5767.m00115

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)