Report for 5780.m00023

 > 5780.m00023, length: 1050, copies: 2 

MKLLSDIIHCSRPVETAAIAGVTKSGIDMAQGPVKSMGSYLWARVTHLVKCEAEVDKMKVKVDSLLRDKTDMETI

IEHANYECRVASEATKQWILDVEEIATQAKDLVVECKGKNPARHDLHDADATQKARKKIEVMNPIRRLQIGALAI

KLLARAEELLKHRNDLFLLVPCRRPPNTLMLRNNVMEFGSRNEIVSQIINALKEDKVHIVGVYGPCGIGKSLLVA

AILEKMKTQKEFDEVITVDLREKPGLEEIKNSFAKQLGMIYSAKLNAHRAAFLAEKLKEKKSILFLDNAWESLDL

WKMGIPVEECKVIVTTQKIEVCKYMGAQVEISVDFLTEKESWELCKFKAGVPDISGTETVEGKIAKRCGRLPLAL

DVIGTVLCGKDKRYWECALSELESSYPLEKAEVLQKIYMPLESSYNHLEGDEKKSLFLLCSLFPGGHKISKNELT

SYWTGEDIFNEFNTLEETRRKLHMRITDIEDSFLLLPINYTKCVMMHDIVRDVAVFIASRFCEQFAAPYEIAEDK

INEKFKTCKRVSFINTSIEKLTAPVCEHLQLLLLRNNSSLHELPENFFQSMQQLAVLDMSNSSIHSLLLSTKDLA

AVRTLCLNDSKVSRGIWLVSSLENLRVLSLAGCSIDSLPEQLGNLKKLRLLDLSSMESLEILEGLISKLRYLEEL

YVDTSKVTAYLMIEIDDLLRLRCLQLFIKDVSVLSLNDQIFRIDFVRKLKSYIIYTELQWITLVKSHRKNLYLKG

VTTIGDWVVDALLGEIENLILDSCFEEESTMLHFTALSCISTFRVLKILRLTNCNGLTHLVWCDDQKQFAFHNLE

ELHITKCDSLRSVIHFQSTNNPTNQLARNCQHLELGRKSTTTAYLSKPKGTQCSALRKLDFVLVARVAAMLSNLE

RLTLKSNVALKEVVADDYRMEEIVAEHVEMEETVGNEIVSADTRYPAHPADVGDSLDPEAFPSLTHLSLVDLPGM

EYFYKVGGEIMRFSWKSLVSLKLGGCHSLKGFPIHGASAPGLKNVELVHNGDKSWYQTLISQDASLAERFKTTQE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	169	464	1.8e-33
NB-ARC [Pfam fs]	188	464	3.5e-34
LRR [Pfam ls]	553	577	0.078
LRR [Pfam ls]	624	646	0.0066

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	553	577	0.0071
LRR [sensitive, ls]	553	577	0.078
LRR [sensitive, ls]	578	600	2.2
LRR [sensitive, ls]	578	600	24
LRR [sensitive, ls]	624	646	0.0006
LRR [sensitive, ls]	624	646	0.0066
LRR [sensitive, ls]	647	670	1.2
LRR [sensitive, ls]	647	670	13
LRR [sensitive, ls]	795	817	5.8
LRR [sensitive, ls]	795	817	64
LRR [sensitive, ls]	823	845	0.88
LRR [sensitive, ls]	823	845	9.7
LRR [sensitive, ls]	992	1015	2.7
LRR [sensitive, ls]	992	1015	30

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	47	1030	3e-58
I2 [L. esculentum]	66	860	5e-23
Mla1 [Hordeum vulgare].	106	672	7e-21
M [L. usitatissimum]	177	861	5e-12
RPM1 [A. thaliana]	183	651	2e-19
Pib [Oryza sativa].	192	698	2e-17
Xa1 [Oryza sativa]	193	748	5e-14
RPP5 [A. thaliana]	202	665	8e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	52	73

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5780.m00023

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)