Report for 5780.m00028

 > 5780.m00028, length: 708, copies: 1 

MSGFVVQGGNSDDRDSSEGYILVVDDVRSAEAWQTIRQYLPDEEGSRVVVTTRFEAVAGECILDRQKDMLHHVDR

LSDDDAKRLFQESVSESMTSSDKMLGQAHIDVSRKILDLCKGLPVAIVTIAGLVACKPQAYEKQCAEICVSLPPV

SVDCHTPEGMTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFISEEHGQSMKERAETNFNLL

IRRNILKPVDHSSDGKVKTCQVHDMILEYIMSKSSEENFITVVGGHWLMRTPSNKVRRLSIHSSDVKHAKETMDR

MNLSHVRSVTVFGSLNQLPFMSLKLGIVQVLDLEGCKGFKKQHVKDIFKMLLLKYLNLRGTDINSIPSKIGKLRY

LETLDIRDTNVQKLPDAIVQLERLTSILGGNTMAQVTLKLPAEATKKPLRTLHILSGIEITGEPTSVNDFHGYTA

LRKLGIHKLQIQEGTPGFKALLSSIQYLGGSSLKNLLINDECSGFIDALDSLTSPPRYFHSLQLYGMFIKVPRWI

AHLTELKNLTLSVTVLRTDTLELLQKLPRMFCLIFSSWTSSKDLDLVDILEKNKSDSEGQILVKHGGFDCLKLLR

LDAPLLPLLVFSERAMGNLERLDMKFNTLEGVFGMDNLASLREVHMTAGEKAGEITKSIVRELEAEAAFVVTGAC

LSLPNKNGFPIWGWCHGGESVILPLYLEFLRFL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	211	2.8e-08
NB-ARC [Pfam fs]	20	132	1e-15
NB-ARC [Pfam fs]	158	211	2.1e-16
LRR [Pfam ls]	352	374	0.75
LRR [Pfam ls]	375	397	5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	352	374	0.069
LRR [sensitive, ls]	352	374	0.75
LRR [sensitive, ls]	375	397	0.46
LRR [sensitive, ls]	375	397	5
LRR [sensitive, ls]	530	553	3.8
LRR [sensitive, ls]	530	553	41
LRR [sensitive, ls]	618	642	0.96
LRR [sensitive, ls]	618	642	10

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	17	646	1e-38
I2 [L. esculentum]	20	562	6e-18
RPS2 [A. thaliana]	20	399	1e-13
Mla1 [Hordeum vulgare].	20	665	6e-57
Pi-ta [Oryza sativa]	20	380	1e-41
Pib [Oryza sativa].	21	647	2e-58

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5780.m00028

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)