Report for 5780.m00032

 > 5780.m00032, length: 849, copies: 1 

MRKTGQDENERLKEVKEKIIAKCNGSPLAIIMLAGRLLVNRNRSANEWEMLLEYAAEPTDHGDIDSIFHLCYAVL

SFPLKQCFLYHSLIPKDHVISCDKVVQMWIAEGFVGADATSELPEVLGMKYYKELVARHLLEPVDEYDGQGHYKM

DNLVHTFAKNVVESESLVVEEGEENPEPFDVEEGHIRRSWAAKEKIEWKAPKELHSLRTLIIIGNVIVQASTGRT

LSSLSRLRTLHVNKNEHVHILLDSLHHMKHLRYLDLSYTDALALPNDIGEMKFLQYICLQGCKKLVKLPKSIVEL

HKLRYLNISETKIKSIPEEGFGGLKNMVSLHGFPSQMMESVIAKDWCSLGELKYMSQLMHLALEGLENCASGSMA

SLAKIDDKKNLASLRLSCTSRLSVNGEVDKETVEEVFDQLCPPPKLQELNIKGFFGARLPRWLIFTNLAELRVLK

LDNLVCCNQLPSTLWQLPCLEYLYIKHTLNVKHIGHGFLLQSSIPGPRETDVAATTPTAATSATAATAATTTTTT

IGGGSTHNRGPYHRLSGAGSVGSGEEGEIVAESATEDAATTTGSSNAIGFPKLKKLVMYGMMKWKEWEWEDQVEA

MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLERISDLPKMESLTVSR

CPKLNILQRLPALQSMELNDQEMERLPDCLRDRPAKLRHLRITCNLDLLTLISRGKGTPEWEKIKHIQQVNACTD

AEDDKTDKRFVFYKRDSDSTETNIEPSPSTSQVGGRFSYFFFIFCSSFYNYKVHSNMVRRSYEYMGQLQVENAMG

ILKGANLHPEVLAEDPRLGDRKDG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	2	115	9.3e-15
LRR [Pfam fs]	302	325	4e-05
LRR [Pfam ls]	302	325	0.00068

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	231	254	4.3
LRR [sensitive, ls]	231	254	47
LRR [sensitive, ls]	255	277	1.8
LRR [sensitive, ls]	255	277	19
LRR [sensitive, ls]	278	301	2.2
LRR [sensitive, ls]	278	301	24
LRR [sensitive, ls]	302	325	6.2e-05
LRR [sensitive, ls]	302	325	0.00068
LRR [sensitive, ls]	385	416	4.8
LRR [sensitive, ls]	385	416	53
LRR [sensitive, ls]	445	468	6.7
LRR [sensitive, ls]	445	468	73
LRR [sensitive, ls]	469	493	3.5
LRR [sensitive, ls]	469	493	39
LRR [sensitive, ls]	603	626	1.4
LRR [sensitive, ls]	603	626	15
LRR [sensitive, ls]	647	669	1.6
LRR [sensitive, ls]	647	669	17
LRR [sensitive, ls]	711	734	2.9
LRR [sensitive, ls]	711	734	32

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	5	385	6e-14
RPM1 [A. thaliana]	6	306	1e-16
Pib [Oryza sativa].	6	307	4e-21
Mla1 [Hordeum vulgare].	7	423	3e-28
Xa1 [Oryza sativa]	7	473	4e-19
RPS2 [A. thaliana]	8	363	3e-18
I2 [L. esculentum]	12	488	6e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5780.m00032

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)