Report for 5780.m00039

 > 5780.m00039, length: 990, copies: 1 

MAVVLDAFASYVSDLLLQVAKDEVGMLLGVSDEITKLDEKLQFLKDYLADAEKKRITDKHVDGWVRKLKGIMYDA

TDILELCQLKAMEQGSSVDLGCCNPLLFCLRNPLFAHDIGSRIKKLNQSLDSICKTGAEFSFMKLEAYQDRRTAS

PLISRTTSPVLERSGVVGDQIEEDTSALVKLLTDDKETIHAENNSLLLAIVGVGGIGKTTLAKNIFNDDAIQEKF

DKKIWLSVTQKFNEPDLLRSAIIATGGDHRSSHDRSVLELSLLNAIKGKNFILVLDDMWTERAWNDFLQIPFSHG

GRGSRVIVTTRDERIARGVKAKYLHHVNKLGSDDAWSLLKKQGRFSIFLGLRFFYTLGFLLVPSKVILSEIDEPE

IEALKDVGMEIIGKCDGLPLAIKVLGGLLCRRDRNHGVWSEILSNSTWSVDGMPQDLNYVLHLSYEDLSPHLKQC

FLHYSLIPKNVVLGYDTIIGMWISEGLVLQCTKGLEELGEDYYKELIMRNLLEPSIEYVDQWHCTMHDVVRSFAH

YVARDEALVLQHLRYLSLATDDISRLPDDIGKMKFLMYIDINACGNLVQLPKSILKLRQLRYLSLGDTHINAIPE

GFHNLSSIRKLYGFPAHMGTGGVSPKENWCSLEELECLSELRDLDLNCLENVSASSYAAKASLCTKEHLIFLKLR

CTSRLGDDGLLKEEGLSEMEQRLVEEVFNEFCPPRCLYNLEIFGYFGCSLPNWMMSPISRTPLTSLRYLFLKDLA

CCTQLPDILSQLLHLFMLQIVRAPAIKRVGSEFLLCHDHGHHSLTAKAFPRLQVLFFVGMVEWEEWEWEEQVQAM

AVLEELLLERCKLRCLPPGLAFHARALKKLWICEVQNLKSLDNFACVVELSVDDNPDLQRISNFPKLRKLDIMFC

PKMEVLENVPELRILTLKDYSIETLPGYLQQVSMRNLFVDCSFELLSSIAMGDTGPEWNKISHIQQVKANSDDGY

DETMCFAASEPNDEK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	149	341	7.2e-40
NB-ARC [Pfam ls]	149	483	1.4e-52
NB-ARC [Pfam fs]	379	483	4.6e-18
LRR [Pfam ls]	584	606	0.032

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	537	559	0.63
LRR [sensitive, ls]	537	559	6.9
LRR [sensitive, ls]	584	606	0.0029
LRR [sensitive, ls]	584	606	0.032
LRR [sensitive, ls]	740	763	6.8
LRR [sensitive, ls]	740	763	74
LRR [sensitive, ls]	827	850	0.73
LRR [sensitive, ls]	827	850	8
LRR [sensitive, ls]	871	893	0.68
LRR [sensitive, ls]	871	893	7.5
LRR [sensitive, ls]	911	933	6.4
LRR [sensitive, ls]	911	933	71

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	679	8e-31
RPM1 [A. thaliana]	16	611	6e-38
I2 [L. esculentum]	34	936	2e-58
Xa1 [Oryza sativa]	144	594	2e-32
Pib [Oryza sativa].	155	612	1e-33
Pi-ta [Oryza sativa]	161	551	6e-18
RPS2 [A. thaliana]	187	611	1e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	32	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5780.m00039

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)