Report for 5791.m00145

 > 5791.m00145, length: 1394, copies: 1 

MDVAVGAASWLLGKVVTQLSDGMVAAYVSSTELGLNMEQIKTDLAYTQGLLDAAEERDVRNNHGLRVLLEILTKQ

ADEAEDVLDELQYFIIQDQIDGTHEATPMVDDGLRGQVLIHGRHALHHTTGNWLSCFCCSSARDDADDPHDIPKS

HSDVPDHVSKLTFNRVDMSNKIKLVIEGIHASCTPVSNLLKIIHPAVGRALPPKRPPTSSTITQDKLYGRENIFN

QTLDAMTNFTIHSRTLSVIPIVGPGGIGKTTFAQYLYNDKTIEAHFSIKVWVCVSTHFDVVKLTQEILKCIYHAE

NEGSRRVDELSNLDQLQITIAQRLKSKRFLLVLDDMWKCGSEAEWGSLLAPFSKGDAKGSMVLVTTRFPSIAQMV

KTTKPIELQGLGDSEFFTFFEECIFGHDKPEYYEDNIIDIARKISKKLKGFPLAAKSVGRLLKYRISQERWIEIL

ERNEWQHQTNNDDIMPALQISYDYLPFYLKRCFSYCALYPEDYHFNNIEISHFWEALGIIDSGSHKNRAEDIGLK

YLDELEGNGFLVKKVDDRTGRQYYVMHDLLHELAQNISSQECINISSYSFRSDNIPWSIRHVSITLQDNYEDSFE

REMENLKRKIDIGNLRTLMLFGEGNASMLILFKDLLKETKRLRVLFMHANSLQSFPHNFSKLIHLRYLKLEIPYD

VELSLPNAVSRFYHLKFLDLGYSKCILPKDINHLVNLCLLNARKELCSNIPGIGKMKYLQRLEEYHVKKRDIGFE

LSELGDLTDLEGELKIFNLEKVATREEANKAKLMSKRNMKKLELAWGMVQRTTRSDVLEGLQPPSNLKALVIKNP

GGSIGPSWLCGNICVNYLKSLHIEGVSWGILAPFGQLMQLEELTLNNIPSTRRFEPNFGGVTQQSFSHLKKVEFV

DMPELVEWVGGAHCHLFSKITSIRCENCPNLSMLLVPSSRFSVSYAQDINTRWFPNLCSLEIENCPKLSLPPIPH

TSMLTCVIVSERKTDLLRLQENKLISHGYRGALVFDNLDKVEDMSIEEMPHVSLTDLQKLSSLTRLAVKGCESML

FSEVEEGVIFPSVQQLEISDCRLTRNSLTKLLNRFPALTEFHLIFSSFEVGEEAVLQLPSSNLLSYVRIWCCKNL

VLPVADGGGLHDLSSLQEVEIRGCGKMFDRCSMVEAGARSNKFFPASLRELNISDELSIQSMALLTNLTSLTHLT

LINCDNLTVHGFDPLITCSLKELVVYKKADDEIHLYSLADDLFLEVATRMTKVIPAGGSYFQQLEKLEVDSISAV

LVSPICSLLAANLRELRFRYDLWMESFTEEQEEALQLLTSLQCLKFRKCLRLQSLPEGLHCLYSLYKLNIAGCPE

IMSLPKDGFPVSLERLRIRDCSIDLMVQVKELEASNPDLHIRLH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	200	515	1.8e-53
NB-ARC [Pfam ls]	200	515	2.2e-53
LRR [Pfam ls]	641	663	0.85

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	641	663	0.041
LRR [sensitive, ls]	641	663	0.85
LRR [sensitive, ls]	1062	1089	0.73
LRR [sensitive, ls]	1062	1089	15
LRR [sensitive, ls]	1172	1194	4.8
LRR [sensitive, ls]	1172	1194	100
LRR [sensitive, ls]	1195	1221	1.6
LRR [sensitive, ls]	1195	1221	34
LRR [sensitive, ls]	1315	1335	2.2
LRR [sensitive, ls]	1315	1335	46
LRR [sensitive, ls]	1339	1360	0.79
LRR [sensitive, ls]	1339	1360	16
LRR [sensitive, ls]	1362	1383	5
LRR [sensitive, ls]	1362	1383	100

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	37	1371	3e-95
Xa1 [Oryza sativa]	158	1372	1e-116
RPS2 [A. thaliana]	183	934	2e-27
Pib [Oryza sativa].	214	720	6e-31
M [L. usitatissimum]	215	1149	3e-11
Mla1 [Hordeum vulgare].	217	760	4e-28
Pi-ta [Oryza sativa]	241	726	7e-26
RPM1 [A. thaliana]	243	737	3e-35
Xa1 [Oryza sativa]	990	1385	5e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	65	88

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5791.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)