Report for 5808.m00117

 > 5808.m00117, length: 1294, copies: 1 

MPALRRSFSIASVMALVFAGKAVATAAISFWINKAFTYLKEYKVEGIEDIKNRLLQSMPKIQVVLDIVNPRYVKE

QSSALDAWLWQLRHAVEEAEDVIDVLEYYKLKEMAKDHKVSVWGSSFSKVKHKVIKSVKHVSILDKNLKQFTHRG

TLKRLREAVEGLDKVASDIMSILTVTEHLKEVASCSQQQEYSTNDDRATGLTLTPPKFVGREKEKEKIVRWLTKA

STDASGNLMSTNHIPILSLIGHGGMGKTTLAQRVCEEMVRKNFKVIWVCVSDRFDVTSVTSKILESATGAKPNAN

CLETLQQSLIHKLKYSTDFLLVLDDVWEDKKIDKWEKLFAPLRTGKSGSKILLTTRMQSVAVLATEAMGIETEFL

SIEGLEEGENLELFSHSVFSGQNPQDFPNLKSVGKQIVKKLGGCPLVTKVVGGHLRSNMSFQHWNNFLQEGLQHF

KGSEDDIMEVLRLSYYCLPTDLQICFRYCSIFPQDYAFKMKDLVLMWIGSGLISEAGNKPPKRLEDIGEQILAQL

AGKSFFETNIKVDPYSQRKENYYIMHDLMHELARYVSSGECARIISPGMLENEKDTVRHLCISGIDHLSTEEVKK

ILHFKNVRTVIIEGSGLIDSNLFHAVENVMEQSKSLRLLQSNLENTFHLPKIAHLKHLCYIDLPRISPDTICGLV

KLYHLLLVKCFNGSREEPKQVRYLGNIDHLRYVNYGKIGEFPIGRLTSLQELHNYRIQGGKGNKISAISNLSTLR

ELEVLGLENVESHEEADNVELNDKKYITLLSLAWSARAAVENRKDELLLNHLEPYANIETLRISGYGGVRSPIWI

ENLCIKNLVSLELARCLYWEKLPSLGELVSLKHLWLECLPSLQQIGQSSEASSSNCVDLSLPPNLDTMIVRRCKE

LRALPILPTTLVHFETSNVGLTKLPRIGKECNENLETKSSRLLVVVVEECKCLNSLEESLLVQGDYIKSIHVLRI

SDCEDLEAAPLVFEQMNELRELDIRNCPKLRTSRGVGDTFLPLALQKLNVNYCGELELPLIGALQGLTHLSELVL

EKCKYLESLPSHDVFKSLKSLKSLEIIGCENLSSLGGLGSLQYLLELKISACSKLMAIGSSQTPDASSTSTLQID

YIEIDLPDILHLEPLKGLCHTKGLVIRGGTQLESLPEEWLLQNRGKLQSLKIYSASSLESLPLHMRDLCSLNLLL

LSGARKLQSLPDFPSSLQKLDITCCCKELEEKVGVYESPEWNNISHIARVHIGTAFSDLLVLILSCKEIHTSWTA

KNAVKRLWTDSSDEILVQA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	192	508	1.2e-47
NB-ARC [Pfam ls]	192	508	2.9e-47
LRR [Pfam ls]	993	1024	4.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	969	992	1
LRR [sensitive, ls]	969	992	23
LRR [sensitive, ls]	993	1024	0.22
LRR [sensitive, ls]	993	1024	4.9
LRR [sensitive, ls]	1044	1069	1.7
LRR [sensitive, ls]	1044	1069	37
LRR [sensitive, ls]	1070	1092	0.54
LRR [sensitive, ls]	1070	1092	12
LRR [sensitive, ls]	1171	1191	1.8
LRR [sensitive, ls]	1171	1191	41
LRR [sensitive, ls]	1195	1218	0.64
LRR [sensitive, ls]	1195	1218	14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	23	754	7e-21
I2 [L. esculentum]	53	1252	1e-92
Pi-ta [Oryza sativa]	78	606	2e-23
Xa1 [Oryza sativa]	183	1102	6e-83
Pib [Oryza sativa].	207	663	1e-19
RPP5 [A. thaliana]	208	1225	2e-13
L6 [L. usitatissimum]	234	1186	1e-13
RPM1 [A. thaliana]	241	761	1e-26
RPS2 [A. thaliana]	241	929	9e-26
Xa1 [Oryza sativa]	719	1232	2e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 5808.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)