Report for 5853.m00050

 > 5853.m00050, length: 859, copies: 1 

MAYDIEDCIDLFVHHLGSLTGKAGVIKKMAWRIKGLQLSHRISGRIQELKARVMDESDRYRRYDTMNISSMSSEA

HLHRDASGSRTRSVDPRLSALYTEAERLVGIDGPKDKIIKWLMDTQGGISQRLRTMAIVGCGGLGKTTLANQVYL

EVKNQFDCSAFVTVSQNPDVKHVLAKFLSDVSGAIGGALADEHHLINKLREYLQDKRYFLVIDDIWDAQTWRIIE

CALVKNSQGSRIVTTTRINEIAKSCCCSYGDQVYEMKALCATDSKRLFFRRIFNSDERCPPQLREAANNILRKCG

GLPLAIISISSLLATKPKSLDQWDKVKSRINYTQENSPDIETMAWVLSLSYFDLPHHLKTCLMYLSIFPEDYVIK

KERLIGRWIAEGFIHAKQGESLYEIGENYFNELINRSLLQPVDIEDDGQVHACRVHDTILDFVVSRSNEENFVTM

VGASDLTSTPTGKIRRLSFHKNSEGSVTMPTYLLRSHVRSLTTFLHAGQVPPLLGFYGLRVLDLENCSGLKNHDL

KSIGRLIQLRYLNIKGTDISDLPCQIRELQYLETLDIRSTHVKELPSAIVQLQRLAHLLVDCHVKLPDGIGNMQA

LEELTGFSVFMYPSTFLQEIGKISSLRVLRVVWNYVDFQGNAETYRENLAISLTKLGTCYLESLSLDIHGHDEED

DFSLHLWTLAPCRLRKLYIGRWHPISRIPNWTESLANLQYLHIYVKRINQEDLRMLGSIPSLLTLYLFSDEAPKE

KLTISSQGFQSLTFFKIHCYHMGLVFEAGSMAKLEYLHILISAFQVKSWDGSFDFGIQHLYCLTKVYAYINCYGL

TAEEAEAAVNAIMISVDTIPNCPKLQIDRRYAPL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	88	394	1.9e-62
NB-ARC [Pfam ls]	88	394	9e-63
LRR [Pfam ls]	533	555	2.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	508	532	0.92
LRR [sensitive, ls]	508	532	19
LRR [sensitive, ls]	533	555	0.13
LRR [sensitive, ls]	533	555	2.7
LRR [sensitive, ls]	556	578	0.63
LRR [sensitive, ls]	556	578	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	789	4e-72
Mla1 [Hordeum vulgare].	1	855	1e-135
Pi-ta [Oryza sativa]	1	632	5e-84
Pib [Oryza sativa].	68	583	6e-69
I2 [L. esculentum]	120	626	9e-43
Xa1 [Oryza sativa]	125	629	6e-35
RPS2 [A. thaliana]	131	580	4e-22
Pi-ta [Oryza sativa]	703	853	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5853.m00050

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)