Report for 5864.m00144

 > 5864.m00144, length: 675, copies: 1 

MAPMPAPAVALAVLVLLSAVPGYFSDDLNTDAQALQALRSAVGKSALPSWNSSTPTCNWQGVTCESGRVTELRLP

GAGLMGTLPSNVLGNLSALRTLSLRYNALTGPIPDDLSRLPELRAIYFQHNSFSGEVPASVFTLKNLVRLDLAGN

KFSGEISPDFNKLNRLGTLFLDGNSFTGEIPKLDLPTLSQFNVSYNKLNGSIPRSLRKMPKDSFLGTGLCGGPLG

LCPGETALTPAGSPEVQPAGGGAADAGGASSGTKKKLSGGAIAGIAIGCVFGVLLLLALIFLLCRKKSSSSTPAT

AVEKGRDLQMAPMDMEPKGQNGSAAGNGAHVGAAAAAPAAATSAAVAAAAAAAKTGGATGGSKKLIFFGPMAAAP

PFDLEDLLRASAEVLGKGAFGTAYKAVMESGSAVAVKRLKDVDLPEPEFRERIAAIGAVQHELVVPLRAYYFSKD

EKLLVYDYMSMGSLSALLHGNRASGRTPLDWETRSAIALAAARGVAHIHSTGPTASHGNIKSSNVLLTKNYEARV

SDHGLPTLVGPSFSPTRVSGYRAPEVTDIRRVSQKADVYSFGVLLLELLTGKAPTHAVVNEEGLDLPRWVQSVVR

EEWTAEVFDQELLRYQNVEEEMVQLLQLAIDCSAQHPDRRPSMSEVAARIDEIRRSSLGDRPATDSAGEGEEPSL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	68	92	7.8
LRR [Pfam ls]	93	116	0.033
LRR [Pfam ls]	141	164	0.0074
LRR [Pfam ls]	187	210	8.3
Ser/Thr pkinase [Pfam fs]	384	581	3.1e-28
Ser/Thr pkinase [Pfam ls]	384	659	3.4e-25

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	68	92	0.25
LRR [sensitive, ls]	68	92	7.8
LRR [sensitive, ls]	93	116	0.0011
LRR [sensitive, ls]	93	116	0.033
LRR [sensitive, ls]	117	140	0.43
LRR [sensitive, ls]	117	140	14
LRR [sensitive, ls]	141	164	0.00024
LRR [sensitive, ls]	141	164	0.0074
LRR [sensitive, ls]	165	186	0.5
LRR [sensitive, ls]	165	186	16
LRR [sensitive, ls]	187	210	0.27
LRR [sensitive, ls]	187	210	8.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	6	206	8e-14
Xa21 [O. sativa]	12	203	8e-24
FLS2 [A.thaliana]	31	206	1e-21
CLV2 [A. thaliana]	46	222	2e-11
Xa21 [O. sativa]	56	210	5e-15
CLV2 [A. thaliana]	63	215	9e-13
Xa21 [O. sativa]	68	308	9e-17
FLS2 [A.thaliana]	69	206	1e-14
Cf-9 [L. pimpinellifolium]	72	234	3e-11
FLS2 [A.thaliana]	72	209	1e-14
FLS2 [A.thaliana]	72	209	7e-13
FLS2 [A.thaliana]	79	206	3e-17
FLS2 [A.thaliana]	79	229	6e-15
FLS2 [A.thaliana]	79	228	2e-14
FLS2 [A.thaliana]	81	215	4e-12
Cf-9 [L. pimpinellifolium]	94	206	3e-12
Pto [L. esculentum]	377	651	1e-30
Rpg1 [Hordeum vulgare]	385	660	5e-13
FLS2 [A.thaliana]	386	654	6e-22
Rpg1 [Hordeum vulgare]	389	672	3e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	24	out -> in
putative TM domain	266	288	in -> out

Report for 5864.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)