Report for 5883.m00139

 > 5883.m00139, length: 974, copies: 1 

MAAETVVSMAMSVLGSAVGKAASAAADEATLLLGIQKEIWYIKDELKTIQAFLRAAEVTKKKDDLLKVWAEQVRD

LSYNIEDCLDEFKVHVESQSLAKQLMKLGERHRIAVQIRNLKSRIEEVSNRNTRYSLIKPISSITTEDERDSYLE

DARNQSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWIT

VSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDIA

FPKINNRGSRIIIKTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGY

LPLAILTIGGILATKKIMEWGKFYRELPSELESNPSLEAMRRMVTLSYNHLPSHLKPCFLYLSIFPEDFEIQRGR

LVDRWIAEGFVRATDGVNIEDVGNSHFNELINRSLIQPSKVSTDGVVKRCRIHDIMRDIIVSISREENFVLLTRE

KITVVAEESIRHLAFHGSKCSKICLEWNHLRSVTLFGDRPVGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNI

GLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSGSGYFSIIDNPKE

CLMITMCLPMVFLTSINFSDRVKLIPEICMSCSTRWSDTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGE

LIQLRKLSVTTKGATNKKYQIFCAAIEKLSSLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKRLKLNGSLADTPN

WFGNLKQLVKMCLSRCGLKDGKTMEILGALPNLMVLRLYRNAYADEKMTFRRGTFPNLRCLDIYLLKQLREIRFE

EGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLEYDGKVAKLDVLQEEVNTHPNHTELQMAEDRSHHDLGGI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	149	466	5.3e-61
NB-ARC [Pfam ls]	149	466	2.9e-61

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	7	905	4e-81
RPM1 [A. thaliana]	9	929	5e-85
Pi-ta [Oryza sativa]	26	657	4e-58
I2 [L. esculentum]	42	861	1e-51
Pib [Oryza sativa].	49	355	1e-33
Xa1 [Oryza sativa]	112	867	3e-31
Pib [Oryza sativa].	160	935	3e-97
RPS2 [A. thaliana]	165	660	9e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5883.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)