Report for 5883.m00143

 > 5883.m00143, length: 1531, copies: 1 

MVASGNQSCLAIDSYAEDIRNQSARNVDEAELVGFSDSKKRLLEMIDTNANDGPAKVICVVGMGGLGKTALSRKI

FESEEDIRKNFPCNAWITVSQSFHRIELLKDMIRQLLGPSSLDQLLQELQGKVVVQVHHLSEYLIEELKEKRYFV

VLDDLWILHDWNWINEIAFPKNNKKGSQIVITTRNVDLAEKCATASLVYHLDFLQMNDAITLLLRKTNKNHEDME

SNKNMQKMVERIVNKCGRLPLAILTIGAVLATKQVSEWEKFYEHLPSELEINPSLEALRRMVTLGYNHLPSHLKP

CFLYLSIFPEDFEIKRNRLVGRWIAEGFVRPKVGMTTKDVGESYFNELINRSMIQRSRVGIAGKIKTCRIHDIIR

DITVSISRQENFVLLPMGDGSDLVQENTRHIAFHGSMSCKTGLDWSIIRSLAIFGDRPKSLAHAVCPDQLRMLRV

LDLEDVTFLITQKDFDHIALLCHLKYLSIGYSSSIYSLPRSIGKLQGLQTLNMPSTYIAALPSEISKLQCLHTLR

CIGQFHYDNFSLNHPMKCITNTICLPKVFTPLVSRDDRAKQIAELHMATKSCWSESFGVKVPKGIGKLRDLQVLE

YVDIRRTSSRAIKELGQLSKLRKLGVTTNGSTKEKCKILYAAIEKLSSLQSLHVDAVLFSGIIGTLECLDSISSP

PPLLRTLRLNGSLEEMPNWIEQLTHLKKFDLRRSKLKEGKTMLILGALPNLMVLYLYRNAYLGEKLVFKTGAFPN

LRTLCIYELDQLREIRFEDGSSPLLEKIEIGKCRLESGIIGIIHLPKLKEIPITYGSKVAGLGQLEGEVNTHPNR

PVLLMYSDRRYHDLGAEAEGSSIEVQTADPVPDAEGSVTVAVEATDPLPEQEGESSQSQVITLTTNDRNRLVGRW

IAEGFVRPKVGMTTKDVGESYFNELINRSMIQRSRVGIAGKIKTCRIHDIIRDITVSISRQENFVLLPMGDGSDL

VQENTRHIAFHGSMSCKTGLDWSIIRSLAIFGDRPKSLAHAVCPDQLRMLRVLDLEDVTFLITQKDFDRIALLCH

LKYLSIGYLSSIYSLPRSIGKLQGLQTLNMPSTYIAALPSEISKLQCLHTLRCSRKFVSDNFSLDHPMKCITNTI

CLPKVFTPLVSRDDRAIQIAELHMATKSCWYKSFGVKVPKGIGKLRDLQVLEYVDIRRTSSRAIKELGQLSKLRK

LGVMTNGSTKEKYSISSPPPLLRTLVLYGSLEEMPNWIEQLTHLKKIYLLRSKLKEGKTMLILGALPNLMVLDLY

RKAYLGEKLVFKTGAFPNLRTLSIYDLDQLREIRFEDGSSPQLEKIEIRFCRLESGIIGIIHLPRLKEISLGYES

KVAGLAQLEGEVRTHPNHPVLRMREDRSDHDLACDAEGSPVEVEATDPLPEQEGESSQVITLTSNNRWITKTGFR

AVTTCYLPLTNPWDTEQTKVWEMTKLPSNHHWDEIKTVQVWTVKCYDLRTVNSWQQWPSSGDVSNEVDCEREASV

NASSSEADHERAGTAWPLPDPLPPPLIFDTM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	16	334	7.6e-58
NB-ARC [Pfam ls]	16	334	5.9e-58

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	473	496	0.79
LRR [sensitive, ls]	473	496	18
LRR [sensitive, ls]	497	519	0.85
LRR [sensitive, ls]	497	519	20
LRR [sensitive, ls]	678	699	3.8
LRR [sensitive, ls]	678	699	87
LRR [sensitive, ls]	725	752	1.7
LRR [sensitive, ls]	725	752	39
LRR [sensitive, ls]	774	796	2.5
LRR [sensitive, ls]	774	796	58
LRR [sensitive, ls]	1050	1073	1.8
LRR [sensitive, ls]	1050	1073	42
LRR [sensitive, ls]	1074	1096	0.85
LRR [sensitive, ls]	1074	1096	20
LRR [sensitive, ls]	1221	1242	4.8
LRR [sensitive, ls]	1221	1242	110
LRR [sensitive, ls]	1293	1316	3.9
LRR [sensitive, ls]	1293	1316	91
LRR [sensitive, ls]	1317	1339	0.72
LRR [sensitive, ls]	1317	1339	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	13	807	7e-41
RPM1 [A. thaliana]	21	807	2e-78
RPS2 [A. thaliana]	23	524	6e-26
Pib [Oryza sativa].	27	193	7e-11
Mla1 [Hordeum vulgare].	28	826	3e-69
Pib [Oryza sativa].	28	804	1e-102
Xa1 [Oryza sativa]	29	524	1e-28
M [L. usitatissimum]	31	676	7e-12
Pi-ta [Oryza sativa]	31	527	2e-45
N [N. glutinosa]	32	308	1e-11
RPM1 [A. thaliana]	893	1346	7e-35
Mla1 [Hordeum vulgare].	893	1213	3e-18
Pib [Oryza sativa].	893	1346	3e-50
Pi-ta [Oryza sativa]	896	1102	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5883.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)