Report for 5905.m00163

 > 5905.m00163, length: 1007, copies: 2 

MRPSMAGVFTHLAWPLLVLVLCSWRIIAAAQAQPRTDPVEAAALNTILGRWGKTASPEWNISGELCSGVASDLSN

WDDYPNLNPFIKCDCKYNNGTLCHINKLCSTHCLACLKESMAQSTESLCDMINLTSDGVWITICIVVCLGWVATR

ANNSALTVTGCILLIAAIEKVYRRRVTKLDVVGPIPSELQNLTYLEDLNLGYNYLTGAMPSFMGKFTSMKYLALP

FNPLSGPLPKELGNLTNLLSLGISYCNFSGELPDELGNMTSLKQLRASDNEFTGKIPDYFGRMTNLVDVAFQGNS

FEGPIPAGFSNLTKLTNLRIGDIVNGSSSLGFISNMTSLSNLILRNCKLSGNLEAIDFSKFATLTLLDLSFNSIT

GQVPQSILNLGMLEFLFLGNNSLTGNLPDVISPSLKTILFAEIFPIISSLEAFLLGIVRTICNYYSFAVDCGSNS

STRGSDNTIYEADPMNLGAGSYFVTGEKRWGISNVGKFDQATNGIDIIYSSDHFQNTVDSKLFETARMSASSLRY

YGLGLENGNYTVLLQFAEFAFPDSQGWQSLGKRIFDIYVQGALKEKDFNIKKTAGGKSFTVVNRNYTATVSKNFL

EIHLFWAGKGTCCVPTQGYYGPMISALSVTPNFTPTVRNGIPKRGNRTGVIAGVLIGSLVLGLATFFGIFIVVKK

RRAMAQQKEELYNLVGRPDVFSNVELKLATDNFSSKNILGEGGYGPVYKGKSQFITEVTTISSVQHKNLVKLHGF

CIDNNAPLLVYEYLENGSLDQALFRDNNLNLDWAMRFEIILGIARGITYLHEESNVRIVHRDIKASNVLLDTDLT

PKISDFGLAKLYDEKQTHVSTRIAGTFGYLAPEYAMRGRLTEKVDIFAFGVVMLETVAGRSNTNNSLMESEIYLF

EWAWDLYEKEQPLGIVDPSLMEYDKDEALRVIRVALLCTQGSPHQRPPMSKVVAMLTGEVEVAEVVTKPSYITEW

QLRDGNRSYVTTSYSGSTTHEFNSKDEIKPFT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	242	265	0.45
LRR [Pfam ls]	266	289	0.69
LRR [Pfam ls]	363	386	0.35
Ser/Thr pkinase [Pfam fs]	708	726	0.095
Ser/Thr pkinase [Pfam ls]	708	958	1.9e-32
Ser/Thr pkinase [Pfam fs]	728	884	6e-39

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	194	217	0.37
LRR [sensitive, ls]	194	217	10
LRR [sensitive, ls]	218	241	0.76
LRR [sensitive, ls]	218	241	21
LRR [sensitive, ls]	242	265	0.017
LRR [sensitive, ls]	242	265	0.45
LRR [sensitive, ls]	266	289	0.025
LRR [sensitive, ls]	266	289	0.69
LRR [sensitive, ls]	290	313	0.47
LRR [sensitive, ls]	290	313	13
LRR [sensitive, ls]	338	362	0.53
LRR [sensitive, ls]	338	362	14
LRR [sensitive, ls]	363	386	0.013
LRR [sensitive, ls]	363	386	0.35
LRR [sensitive, ls]	387	411	0.26
LRR [sensitive, ls]	387	411	7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	109	403	4e-25
Xa21 [O. sativa]	151	438	1e-17
CLV2 [A. thaliana]	156	407	6e-15
CLV2 [A. thaliana]	163	413	5e-17
FLS2 [A.thaliana]	164	414	2e-19
Xa21 [O. sativa]	170	406	2e-25
FLS2 [A.thaliana]	175	407	3e-29
FLS2 [A.thaliana]	175	404	1e-22
Cf-9 [L. pimpinellifolium]	176	406	6e-17
CLV2 [A. thaliana]	176	403	9e-18
FLS2 [A.thaliana]	176	406	8e-28
Cf-9 [L. pimpinellifolium]	178	404	3e-18
Cf-9 [L. pimpinellifolium]	181	403	4e-17
Cf-9 [L. pimpinellifolium]	181	413	2e-13
FLS2 [A.thaliana]	181	426	3e-25
FLS2 [A.thaliana]	181	413	1e-22
FLS2 [A.thaliana]	181	331	3e-13
Xa21 [O. sativa]	181	403	1e-25
CLV2 [A. thaliana]	183	407	5e-20
CLV2 [A. thaliana]	183	384	2e-14
FLS2 [A.thaliana]	183	403	2e-26
FLS2 [A.thaliana]	183	406	5e-25
Xa21 [O. sativa]	183	778	7e-38
Cf-9 [L. pimpinellifolium]	187	400	6e-11
Cf-9 [L. pimpinellifolium]	189	406	3e-17
CLV2 [A. thaliana]	229	413	5e-11
CLV2 [A. thaliana]	243	408	2e-12
FLS2 [A.thaliana]	636	956	2e-32
Pto [L. esculentum]	700	966	1e-48
Rpg1 [Hordeum vulgare]	701	957	1e-31
Rpg1 [Hordeum vulgare]	701	964	9e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out
putative TM domain	651	673	out -> in

Report for 5905.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)