Report for 5909.m00198

 > 5909.m00198, length: 1420, copies: 3 

MTELAAGAVSSLLVVIRNEAVLLGGVRDDVQFIKEEMESMNSFLGHLARSAPQGGEHDEQVRTWMNQVRLLAQDC

NNCIDLYLYSGNPEIHRAKGRLRRHLWWVYWSLRKMVAQHRAAIQLRQLKDRARDVGERRLRYGVEIPATTKAAA

PDATGGYAAGDDEEEDEDDREGQFAVATPTLAHHSARWPVFEPPSLDDYVKAKLLEWIEGVPGNAIVTLSIAIVA

PDADNKEVLAIAHETLVAPDYYYRRSIMVNVPAVHLDFLPLRPKEVLYYILRELEREEAAGSQKQPTDQGEWEEE

DPDPWQDYYKKCGIYRSKKGVLDKIKRNIKKMNIYEKLDKIKSDIREGQHKSGKLLLLKLQEKGADQVDLHVLLQ

LLVLQSQQDQAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAVRQGGGGERKEDEKD

ERGDGEEEGKEERRDMEKGEERKEQQQEEQEKEGRKEEQNEVRKETEGRKEQVAGEEEEKEDHDADNDEDSNDDD

DDEEEEEEDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAEQATKTAATTLDEERIKQMINEAKQDV

LRELRGRETDKNQATGEPDVPPDKNQATGQHAVVLDQNEEAYFEEVEQKIEEIKQELKEQLKIKWIVDKIKHHLQ

DQCPLIILKFDQMMDGSRWEEIRKALSLLELSADALIFTTGSTEQAKGYCYPPREPIDHCSLVGLYYYTVLKLTS

KHKNEDNDNAQIFRGILEECEGHEFCMKIFTHAVYANPKRSNEELRKLHSTLQSPKKSFDTIAKKMFMYSYNDLP

KEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRCFDALIRRWLVYPDDISATGKIKSCVV

GDPVHGFITAIARKQHIVETRLSHHLARHFSIFNDLRLRSSDRIGTFFQGLSRSSRVSLLKVLDLEGCQCFASKN

QRYLKDICNKMLLLKYLSLKGTDITQLPSEINCLRELEVLDIRETKVPANATVNVLLLKLKRLLAGASQIDPTPR

NFVTNVRIPSRIDKMINIEVLSNVKAQHHDNLEDIGKLCQLRKLGVVIDGKKSHLGSLLKAISDLHASLRSLSIT

IPTTTLEVTPSSPELQDIASRLKHHPEFLESLSISGAKHLFPLLTEGGNKKLAKVTLSNTPLNQDDLKFFAQLPM

LQCVRLRHISCTESVLNFKKDDFKCLKYLLIEGSNLTNITFEDEAACELEKMVLSSTCIESISGVHGLPKFEELE

LNSSSCGRLLSSCFYNVERIAKLTLRGTLLKQGDLRIIARELNICCLVLLENSFDISQNQITFEKEEFIWLKLLS

VDCSTITKINFITGSAPRLKKIVWSSFTSLSGINNLPRLKELEFNGYSVPNDVEEAIKNNKSINLKHNKP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	818	864	8.5e-13
LRR [Pfam ls]	988	1010	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	988	1010	0.4
LRR [sensitive, ls]	988	1010	4.4
LRR [sensitive, ls]	1176	1199	3.2
LRR [sensitive, ls]	1176	1199	35
LRR [sensitive, ls]	1248	1269	1.5
LRR [sensitive, ls]	1248	1269	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	650	1094	1e-17
Mla1 [Hordeum vulgare].	666	1245	1e-27
Pib [Oryza sativa].	666	1277	9e-22
RPM1 [A. thaliana]	762	1276	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	460	483
putative coiled-coil	637	664

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5909.m00198

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)