Report for 5913.m00123

 > 5913.m00123, length: 1357, copies: 2 

MEPGSSSREGEQQEPANERLTATGGGGGGGGGSPVSDQELSDGEEVSDGEYQAGDDFSGYAVRGRGFVEKEHIFD

KVVTPSDVGNLGRLVIPWQHAECYFPRDVPANEREGVVLRFEDDAGNSWRFLYRGSSLTLGWSHFFRKNRLDAGD

MVSFYRGASEATRDRLFIHSKRRMHILPTLGYSDPQVHINRLFQLLVRVRTMVSSFGKSGSPSPPNSPLPTVQNF

TYKALKDCLQDLHYYSLLSMMGRNHKSQSTSAKIRDTIPTLDALIQLRSLSDPVFRIPAAATSHCILLCRGVLGI

MGFLCSDENMKEDHRMLQVPAFDDLNYSAQDKITRMKEQTMPSSLADPIYLLPTAIRNLLYLDLSNCSDIVQLPP

SLGSSLHMLSALNLSCCYSLRALPDSLVCLYDLQILLLSFCHNLQNLPVSFGDLSNLRLLDLSGCRSLRLFPSSF

VNLGSLENLNLSDCIRLMGIPQNFEDLQKLEYLNFAGCYRVDLPVYCLTNLVNLKCLTLSNHTDIKDFPYSFTDL

KRHLYLSRWWKYNWVHTQCNLKSYRCHQQRIINSLLSDGSDEGDITSEQSLTSICIFGERGTGKTELLHEIYNDQ

KILEGFHLRIWINMCDKKRLLEKIIEFTACAYCYDAPSSILEETVREELNGKRFLLVLNDADIENQCFWTDVWKV

SNVGAAGSALIVTTRSKEVASLFGAMKPYYMNPLSKEECFMVFQEHADCGFDINNDHELTKVGWKIVEKCGGNLL

CMKALSGLLWHSKTALSEIDSLVGGIVPALRLCYDLLPSHLKQCFKFCSLFPKDYVFVKHHIIQLWISQGFVYPE

EDSQPEDTGLQYFNEFLCRSFFQHCPFSNDHEDKFVMHELFHDLARSVSKDESFSSEEPFFSLPENICHLSLVIS

DSNTVVLTKEHRHLQSLMVVRRSATEYSSSFVPLLKILGLNDLLMKCGFLRALNLSCTTIVDLPGSIGRMKHLRF

LAMNNTKIKSLPTEIGQLNTLQTLELKDCCCLIELPESTKNLMKLRHLDVQKEPGNIHVGMPSGLGQLTDLQTLT

VFNIGDDLSHCSIRDLKNLSGLRGHVHITGLQNITAGDDAKEANLVGKQFLQALTLEWCCSSEEMEDESDKEIAN

QVLQNLQPNTSIQELAIQNYPGNSFPNWIKDSGLCMLVSITIDNSQDCNEIPYLGDLPCLKFLFIQKMYAVENFG

QRSNSLTTDGKHAPGFPSLEILNLWEMYSLQFWNGTRYGDFPQLRGLSISRCPKLSNLPPLISLLYLSFHCGDQL

PALSEFPSLKSLKIEGFQKLKSVSFCPEMPLLQKLEISDCKELVSIDAPLLSVSNLKVVRCPKLHFGGSWLEGCL

MWEEFKR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	358	382	0.04
LRR [Pfam ls]	407	430	1.7
LRR [Pfam ls]	431	454	0.23
LRR [Pfam ls]	455	478	0.12
NB-ARC [Pfam ls]	539	827	9.3e-22
NB-ARC [Pfam fs]	586	827	1.8e-28
LRR [Pfam ls]	949	971	6.5
LRR [Pfam ls]	1243	1265	6.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	358	382	0.002
LRR [sensitive, ls]	358	382	0.04
LRR [sensitive, ls]	383	403	3.3
LRR [sensitive, ls]	383	403	69
LRR [sensitive, ls]	407	430	0.084
LRR [sensitive, ls]	407	430	1.7
LRR [sensitive, ls]	431	454	0.011
LRR [sensitive, ls]	431	454	0.23
LRR [sensitive, ls]	455	478	0.0059
LRR [sensitive, ls]	455	478	0.12
LRR [sensitive, ls]	479	502	0.53
LRR [sensitive, ls]	479	502	11
LRR [sensitive, ls]	503	526	1.6
LRR [sensitive, ls]	503	526	32
LRR [sensitive, ls]	949	971	0.32
LRR [sensitive, ls]	949	971	6.5
LRR [sensitive, ls]	972	994	0.37
LRR [sensitive, ls]	972	994	7.6
LRR [sensitive, ls]	995	1018	0.91
LRR [sensitive, ls]	995	1018	19
LRR [sensitive, ls]	1243	1265	0.32
LRR [sensitive, ls]	1243	1265	6.6
LRR [sensitive, ls]	1306	1330	0.64
LRR [sensitive, ls]	1306	1330	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPP5 [A. thaliana]	359	548	1e-10
I2 [L. esculentum]	556	1339	4e-94
RPM1 [A. thaliana]	558	1058	1e-32
Mla1 [Hordeum vulgare].	565	1190	2e-31
RPS2 [A. thaliana]	570	1259	1e-21
Pi-ta [Oryza sativa]	573	1089	1e-15
Pib [Oryza sativa].	574	1249	1e-22
Xa1 [Oryza sativa]	576	1335	1e-52

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
B3 DNA binding domain	73	174	1.5e-14

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5913.m00123

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)