Report for 5924.m00162

 > 5924.m00162, length: 852, copies: 1 

MPFFIPPSVCALGFLSIDCGLEGDDSYPDDQTGITYVPDGPYVDSGENHRVTTVYRNYWGQDYRTLKTLRSFPSA

SGKRNCYSLPTNVGDKYLVRLEFLYGNYDSMDSSLLKFNLSLGVNHWNTVNLDTTDDQDGYNFYEAVFVAWASWA

PVCLINIGQGIPFVSTVELRLLGTLPYPAIIGNQSLSLYVRRSIGSSADDDMRYPDDQYDRYWIMGETTGAADMS

NISTPTIIPPSVPFAVPSPILQKAVVPADNSMKLVFHSDQLDAQLRDHLVILHFADFQNNKSREFTVSIDSGVQS

GPFSPPYLKVLSITTDWSSDTEGKYNFTLTATSTSSLPPILNAYEVYGRIIHDNPMTFSQDFDAIMAIKYEYGIR

KNWMGDPCFPPEFAWDGVECSSDGKTMRIISLDLSNSELHGLISNNFTLLTALKYLNLSCNQLNGAIPDSLRRKN

GSMVLSYESGGDMCKKPVSPSSRNRAAALAVSVVVPMLAVAILGLAYLFWRAKRKHNNDPPTVLELTGAPGHKTN

HWDRLQKPENRRFTFEELQKFTDNFKRLIGHGGFGHVYYGSLEDSTEVAVKMRSESSLHGLDEFLAEVQSLTTVH

HRNLVSLFGYCWDDDHLALVYEYMSSGNLCDYLRGKTSMTETFNWATRVKIALEAAQGLDYLHKGCNLPIIHGDV

KTNNILLGRNLKAKIADFGLSKTYHSDSQTHISASIAAGSMGYIDPEYYTTGRLTESSDVYSFGVVLLEVTTGEP

PIIPGNGHVVQRVKQKIVTGNISSIVDTRLGGSYNVSSMWKVLDAAMMCTTNIAAERPTMATVVMQLKESLELEE

AHGERGDMENQARDNTYLMSTFGPLAR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	403	426	2.2
LRR [Pfam ls]	427	450	1.2
Ser/Thr pkinase [Pfam ls]	548	815	9.2e-35
Ser/Thr pkinase [Pfam fs]	549	751	5.9e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	403	426	0.086
LRR [sensitive, ls]	403	426	2.2
LRR [sensitive, ls]	427	450	0.047
LRR [sensitive, ls]	427	450	1.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	397	817	1e-43
Xa21 [O. sativa]	406	638	9e-15
Pto [L. esculentum]	534	826	7e-52
Rpg1 [Hordeum vulgare]	534	817	2e-29
Rpg1 [Hordeum vulgare]	538	817	2e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	477	499	out -> in

Report for 5924.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)