Report for 5926.m00185

 > 5926.m00185, length: 1016, copies: 2 

MMCRAGQWLLPHLAYPFKTAQNVDKLTKFRRKLQALRDDNEVRIKNAERKQKICPNIVSEWMEEARQAIDEADEI

KAEYDSRTLCFHRLPPNFNVTRSYGISSRATKKLVKLKVVYNNGDNFNEDEFPDKPPANVERRHIGTSVVGMECY

LDKALGYLRKRDIPVLGIWGMGGVGKTTLLKLINNEFLGAVDGLHFDLVICITASRDCKPENLQINLLEKLGLEL

RMDTGRESRRAAIFDYLWNKNFLLLLDDLWGKISLEDIGVPPPGRDKIHKVVLATRSEQVCAEMEARTTIKVECL

PQDDAWKLFLHNVTEATINLDMRIQRLAKEVCNRCKGLPLALVSVGKSMSIRRQWQEWEAALRSINRSYQLLENS

RRNSDNAILATLKLTYDNLSSDQLKQCFLACVLWPQDYSIWNIDLVNCWIGLGLIPIGKAICQSHNDGYSVIGQL

KSVCLLEEGDMRQTEVRLHDTIREMALWITSEENWIVKAGNSVKNVTDVERWASATRISLMCNFIKSLPSELPSC

PKLSVLVLQQNFHFSEILPSFFQSMSALKYLDLSWTQFEYLPRDICSLVNLQYLNLADSHIASLPEKFGDLKQLR

ILNLSFTNHLRNIPYGVISRLSMLKVFYLYQSKYAGFEKEFDGSCANGKQTKEFSLKELERFENGLALGITVKTS

RALKKLSKLQNINVHNLGVEQLEGESSVSLKLKSSMSVVNFKMCLDIETLSIEYVDDSYPEKAIPYLEYLTFWRL

PKLSKVSFGEDLLYIRMLNIVENNGLVDLTWIVKLPYLEHLDLSFCSMLKCIIAETDDGEESEIMADNTRVHAFP

RLRILQLNYLPNLEIFSRLKLDSPCLEYMDVFGCPLLQEFPLQATHEGITHLKRIRGEEQWWSKLQWDCNKTFDH

YKGFFKVFDKNLETFEPTLGTNPFIVSNSSFFARRRPMMRTAIQFSSYISLLLGGQTSNYTGETSETGSRNLEAH

SCRRYKMGIASVIRSCCIFLIGLCLLWYSASVFFHYALAKK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	128	435	1.8e-62
NB-ARC [Pfam ls]	128	435	8.7e-63
LRR [Pfam ls]	527	551	3.6
LRR [Pfam ls]	552	574	3.3
LRR [Pfam ls]	575	597	0.011
LRR [Pfam ls]	598	622	0.41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	504	526	1
LRR [sensitive, ls]	504	526	27
LRR [sensitive, ls]	527	551	0.14
LRR [sensitive, ls]	527	551	3.6
LRR [sensitive, ls]	552	574	0.13
LRR [sensitive, ls]	552	574	3.3
LRR [sensitive, ls]	575	597	0.00041
LRR [sensitive, ls]	575	597	0.011
LRR [sensitive, ls]	598	622	0.016
LRR [sensitive, ls]	598	622	0.41
LRR [sensitive, ls]	683	706	1.4
LRR [sensitive, ls]	683	706	36
LRR [sensitive, ls]	787	811	1.4
LRR [sensitive, ls]	787	811	35

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	18	862	2e-34
L6 [L. usitatissimum]	30	801	8e-13
RPS2 [A. thaliana]	33	893	1e-106
N [N. glutinosa]	143	624	2e-19
RPM1 [A. thaliana]	143	689	2e-31
M [L. usitatissimum]	144	864	2e-13
Pi-ta [Oryza sativa]	144	602	8e-14
Xa1 [Oryza sativa]	159	867	1e-25
Pib [Oryza sativa].	161	633	4e-19
Mla1 [Hordeum vulgare].	166	627	6e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	62	82

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	992	1014	out -> in

Report for 5926.m00185

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)