Report for 5933.m00042

 > 5933.m00042, length: 993, copies: 1 

MSLSKTIGFISGINECVNLFQWATSALSTLHSRWSGKQQQKLQGELLQLQSSLQRLRDTLPANYDLIDRAEWRIH

KHCVANLLPNIKDAVYNADDLLDEFRWYEQKVALESNANQSPFMDFFNNMIQGSFNKVNDIMERLDNISSQLERM

GLHEIPQRFDKSLRPETSSFPNERKIFGRDKELKKVMELLGVPINLTRACYKRKRNSSTADASMSTSEKSRISCF

SVLPIVGIGGVGKTTLAQHICNHPQVKSHFDLIIWTCVSDDFDATRLIKEAIQSSSGKEATTDNLNCLQLGLSNI

VNNKRFLIILDDVWDDALKENGQCWERLCLPLENGLQGSMVLVTTRSSKVADGVSTMDPFTLDGLKDDIFWDFFK

LCAFGSQSSNNDPDLEDIGRGILPKLKGSPLAAKTLGRLLRMNLQIPYWNNILLSELWDLKQEETDILPALRLSY

MYLPFHLKRCFSFCAVYPKDHKFEKNILAEIWVAEGFVESDGGFPILDIGHRYFEDLFLYATKCALESLPSDFSK

LINLQTYESVGFAYYRMKNLLPVAGNDRNVRLMKNLNQFCGDLDIYPRGFSKDLAIEIDLKNKKDLRRLTLNWLF

SSCKDNEIVLQVLQPPTNLKCLEVAGYGGESLPCWSNNGSISVFPSLTDLAISSCEKLSSLDHFLQADYMPVLER

ISIRECANVTSLQTERFGEFSCLGDFTVSNCPKLFHNSGSLSVPTLKNLELRNSGILLSNIECSSLTSLSFKCVH

VTAIPIQLLSGNLPSLQKLNIIECESLTFIGESYPLNGAFSFLTVLIIECCHRLPTLDGLLKKEHLPAIEIIKIY

SCTGLLSLPGESLTCLVELTMIKCHGIESFPNQMWRSNLASLKELHIADCPDLVSIGAVKPISKIKTVYIYECQK

LTTVKQPFTRRGRPYQILSLPNFGMTNFDKRSGVSLCMEPVRAGRIGQLDRCDVLILRESVAGDGSGVNLGEDDI

RTIRISCGTLSLKNNARG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	159	493	1.2e-58
NB-ARC [Pfam fs]	227	493	1.1e-61

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	4	507	2e-31
N [N. glutinosa]	45	895	6e-11
I2 [L. esculentum]	53	961	8e-66
Mla1 [Hordeum vulgare].	86	507	2e-24
Xa1 [Oryza sativa]	133	489	3e-56
RPS2 [A. thaliana]	227	518	3e-19
Pib [Oryza sativa].	227	507	3e-17
Pi-ta [Oryza sativa]	227	507	3e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	40	60

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5933.m00042

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)