Report for 5935.m00141

 > 5935.m00141, length: 1089, copies: 1 

MAMVLDSFVTRCTASLEDFAGQEACGALGIGDDVRCLLATLRRVQAVVSHEERRGRVLSAKVDAWVAQVKDAMYE

TDDVLDVSMVEGGKMLAEGDSPPTPKARCSLMFSCFKPASAPKFHHEIGFTFREIDAKLREIEEEMPRLPAGSLH

SESRRDWFSRGICSNFSDAIRPLAVGTQVQKSLDGLVPRMIREGKKKVDVLAIVGAVGIGKTMLAREIYNDERMT

ETFPIRVWVKMTKDLTDVDFLKKIIIGAGGGVNVGEIESKKELLGIVSSTLSKRFLIVLDDLDNPGIWDDLLKDP

LGDGVARGRILITTRSEEVATGMKAMVHRVDKMDAENGWALLCRQSLPECSSEELASLKDVGIKIVERCDGHPLA

IKMVAGVLRSRGKSKAEWEMVMRSDVWSMRPIIPELPQALYLSYVDLPSELKECFLHCSLYPEELPIQRFGLIRR

WIAEGLVSDKDNKLLEDSAEEYYAELVSRNLLQLYAGNLDQCWITHDLLRSLARFLITDESILISGQQRLSTDPL

SLSKPRHLTLCNMENRFDDPISVKQQMSLRSLMLFNSPNVRSIDNLVESASCLRVLDLSKTALGALPKSIGNLLH

LRYLNLDETQVRDIPSSIGFLINLETLSLQNCQRLQRLPWTVRALLQLRCLSLTGTSLSHVPKGVGDLKNLNYLA

GLIISHDNGGPEGCDLNDLQTLSELRHLHIENLDRATSGASALANKPFLKDLHLCEQAPLIEEQQSEQEQENQDD

QKETEEEEKEVLDVTNSQFSREESIKASEKIWNELTPPQNIEKLVIKNYRGGKFPNWLTGPKLGISFPSLVYLDI

DNCMSCTALPALGLLNQLQSLQISNADSVVTIGPEFLGAASSSSATASFPKLEILKLRNMKKLEEWSLAVEENQI

LLPCLKSLHIQFCPKLKALPEGLKNVSLRELHVEGAYSLTEIKDLPRISDDLQLKDNRALQRISSLPVLQSLTID

NCPKLKHVSGLDTLQHLRLAFPPSTETFYFDELIIFWSIAFPRWLELLIRKRDGLCHFELQCSLSLLRSCLDGGK

NWSIVQQIPEVRITSTDGKRYIRYNKRRCIYETNAQSED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	157	462	3.7e-53
NB-ARC [Pfam ls]	157	462	4.8e-53
LRR [Pfam ls]	577	599	1.8
LRR [Pfam ls]	600	622	4.3
LRR [Pfam ls]	623	646	3.2
LRR [Pfam ls]	647	669	5.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	553	576	2.6
LRR [sensitive, ls]	553	576	55
LRR [sensitive, ls]	577	599	0.085
LRR [sensitive, ls]	577	599	1.8
LRR [sensitive, ls]	600	622	0.21
LRR [sensitive, ls]	600	622	4.3
LRR [sensitive, ls]	623	646	0.16
LRR [sensitive, ls]	623	646	3.2
LRR [sensitive, ls]	647	669	0.25
LRR [sensitive, ls]	647	669	5.1
LRR [sensitive, ls]	819	841	0.54
LRR [sensitive, ls]	819	841	11
LRR [sensitive, ls]	842	866	0.79
LRR [sensitive, ls]	842	866	16
LRR [sensitive, ls]	904	924	0.53
LRR [sensitive, ls]	904	924	11
LRR [sensitive, ls]	927	949	3.1
LRR [sensitive, ls]	927	949	63
LRR [sensitive, ls]	968	990	1.8
LRR [sensitive, ls]	968	990	38

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	30	680	5e-40
I2 [L. esculentum]	37	981	3e-85
RPM1 [A. thaliana]	65	948	6e-52
Pi-ta [Oryza sativa]	65	705	2e-32
Xa1 [Oryza sativa]	133	994	1e-52
Pib [Oryza sativa].	180	674	1e-36
M [L. usitatissimum]	186	1008	2e-12
L6 [L. usitatissimum]	196	993	1e-13
RPS2 [A. thaliana]	200	706	2e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	740	764

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5935.m00141

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)