Report for 5939.m00152

 > 5939.m00152, length: 1000, copies: 1 

MALRRVLLFVKPFDVYPPRPLAAAASSPPPPPPPLRVSNPKVLNYLDDRCRVHKETINLCKSVLQRKSIDWISVQ

RNDMSNPIHDVDLVISVGGDGTLLRASHFLNSSIPVLGVNSDPTCPDEVDELTDEFDARRSTGHLCAATAANFEQ

ILDATLDGSRQPSELSRISVKLNGLQLPTYALNDILVSHPCPASVSRFSFRSSGLRVATPAGSTAAMLSAGGFVM

PISSHELQYMIREPISPRDADKPLLHGLRSDKNGCSGVCPSSRLTTLDIFGLGAGAALVQKRATFIMRCTSLDLP

ALGDFLTHVQHKPATHLGENIILLLRKHIYYCLNPESNVHNLMIAADDLRDTIDTIEERILVGECEGKKPKAQAT

SWIRSAQSVRDESDKIKNGYEARRIHALGCSWNFFFNYSVSNSATKMHANADEIKKRAPENDGMFSSLPLVGREM

PLPPYIVGQDEYKDKIVGSIKQGTTGTIGICGMGGSGKTTLLKQLNNIFSCAAETHEFDHVIYVEVSQQQNLETV

LQNIASQLGIMLTQNKDATFRSASLYNFLKERSFLLLIDDLWQTLDLVKVGIPQGGRQLGPQNRQMIVITSRLQQ

VCYGMDGHCQMIVLQRLKFNEAWSLFESNAGIRITNNVQVKCHAESIVEKCGGLPLALKIVGQAMASKGTEHEWE

LAVNLLEQSQFHKVPDVENDLYSVLYISYDNLPDERTKQCFLFFAFASYGTHLDLSYTPIQSLPVRFRLLKKLRY

LYLRYTRKLQTVPDGTISALSMLRVLDIHGSVFFTKVKARSYLEELESLTSLQLLRVTVVDFQSLRRIFNLSRVS

LRDRIGTPPSFVPTYQQSKGTTSRSSGSELYEEFGEVDDRLHHLTKLGSIMWKGVMPHACFPKVRTVDIIGCHSI

KTLTWINQLPCLEEVYLYNCNSLLEVVSDDDEEDTTMPSATASSSFPRLRHLGLSHLKDLYKICGDGRLGFPCLQ

RLLVYECPMLARLPFVLWNGSAVCL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	442	744	5.3e-36
NB-ARC [Pfam fs]	478	722	1.3e-43
LRR [Pfam ls]	747	771	0.095

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	724	746	1.5
LRR [sensitive, ls]	724	746	37
LRR [sensitive, ls]	747	771	0.0037
LRR [sensitive, ls]	747	771	0.095
LRR [sensitive, ls]	772	800	2.4
LRR [sensitive, ls]	772	800	60
LRR [sensitive, ls]	911	936	3.2
LRR [sensitive, ls]	911	936	82
LRR [sensitive, ls]	973	997	3
LRR [sensitive, ls]	973	997	77

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	339	720	1e-38
RPM1 [A. thaliana]	456	718	4e-17
I2 [L. esculentum]	459	720	1e-14
Pib [Oryza sativa].	478	720	1e-12
RPS2 [A. thaliana]	727	990	1e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5939.m00152

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)