Report for 5953.m00113

 > 5953.m00113, length: 820, copies: 1 

MSEAIALAMSKIETCVETGASFNNAMSKLSKKDKVVKELLEKIKQIQEQLDITNDFIQNHIGTANLGDPLDESWI

ATVRRLAFIVEDVMEKYLYYAHQLQEEGSQKHPVKRSSYVDVFKKVGQLMDKINNRIGHLLSIREQSKLAPQLVP

HSPYPDSEGQPELIGTNGPINVLLKFLKHGEDGAVLQLKVLSMLGIGGIGKTALASKVYRMLREEFQSHAFVTVS

KMPDMTRVLFDILDQIGLRKYPASLNENQVITQIGQDLKDKRLIDLTTKHLFSFLFLAFLKEEEGDKFREELFGG

EEKKMNCYLIVIDDLWDMQHWKTIKDALPDVNCGSRLIVITRLNNIAKTCSSGQNNLTYKVMPLAHHDSRTLFLK

EILGHEGSCLDAPVFDEILKMFGGDSNQKPKSLSLARSITLCGYAKPVSFKLLEHLHVLDLEGCWNVDNSTLDDI

CRMILLQYLSLKKTRITVLPPQIENLRCLKTLAVTQTGIAELPLQIGKLPDLETLDVRHTQVKEIPKELVQLPKL

VCLLFGQSGFHGGVKFPVGGNPSKSLKVLGSIDSTQCSASFMGELSSLTGLTKLSVVCYDGTKDMEWNLRMMNSM

FKFSNLESLTIYGDFILGNEVPALQNPPKLQKLKLAGRCLSVPGWIDKFSDVTLLDIRVCSLEESDMKILCKMSS

LQRLVLTQVHMPIKQLEITKEASFSKLNGFTFDCRVPWVTFKEEAMPSLQYLELKLYAGPAGKIPSGITCLPCLT

KVILRYLVHYQSSASVQDTISKMRKESSEHPNMIVLSQNGEHEIFPQNAVSRNGELEIVPVNAVDGMHQD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	143	493	3.3e-06
NB-ARC [Pfam fs]	160	267	3.2e-08
NB-ARC [Pfam fs]	308	349	7.8e-06
LRR [Pfam ls]	455	477	3.7
LRR [Pfam ls]	501	523	2.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	430	454	3.5
LRR [sensitive, ls]	430	454	39
LRR [sensitive, ls]	455	477	0.34
LRR [sensitive, ls]	455	477	3.7
LRR [sensitive, ls]	478	500	4.5
LRR [sensitive, ls]	478	500	50
LRR [sensitive, ls]	501	523	0.22
LRR [sensitive, ls]	501	523	2.4
LRR [sensitive, ls]	605	628	4
LRR [sensitive, ls]	605	628	43

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	23	461	2e-12
RPM1 [A. thaliana]	26	347	4e-11
Mla1 [Hordeum vulgare].	68	399	1e-29
Pi-ta [Oryza sativa]	156	781	2e-19
Pib [Oryza sativa].	160	395	1e-11
Pib [Oryza sativa].	408	730	1e-11
RPM1 [A. thaliana]	455	680	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	31	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5953.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)