Report for 5969.m00120

 > 5969.m00120, length: 975, copies: 1 

MEATAVSLARSVLDGVLNRAGSAVADEAALLLGVRREVEFIRDELDMMRSFLKVATANPDADDTVRTWVKQVRDL

AYDVEDSLLDFALFADTLSSSSSSSWWLPWRIAERHRVAARIRELKASVEELNQRFLRYRIVVEHPRASRGGGAS

DDQQQLHDHDGQYYSAELAFQESDIIGRAREKAEVTALVLSGCGGGDVVGGGALGVVSVWGMGGMGKSSLVRMVY

NDPELLDAFDCDAWVTVPHPLDSADEFVRRLRRHLAVGKDQDVHAYLREKRYVIIVDDLHSREEWEHIWPVLHVD

GGKGSRVVVTTRREDVARHCAGLVREGHGHVYELRPLGREESKDLFCQKVYKSTEYILEKEMEDLAGPILKRCRG

LPLAISTIGGLLANRPKTGIEWIKLDEHLGAELESSDLRNITKVIVSSYDGLPYYLKSIFLYLSIFPENHEIRCT

RLLRRWMAEGFIAKNRDMPVEEVGQRFYNELINRSMIQPSKKRISPSVSVDRCRVHSMVLQIILSKSIEENQLFI

IKKHCNEVPQSKIRHLVVSRWKRRDERLENINFSYVRSLTVFGDCPASLISPKMRLLRVLDLEDSLNLKNEDLRH

VGELHHLRYLCLRGTEISKLPSFQNLRYLETLDIQDTKVTQLPDGIAKLEKLRYLLAGVNFSKELLHKVEQPETD

NRKANQLGNMLSCLYCNSSDYCGISSLDRVSVRAPEGVEKLRDLHMLGVINVGHGNGVVGKIKKLTNLRRLGVSG

VLKEEGQDLCKSIEKLSRLQRLELRSDSLKFLAESEFAAPKHLLSLRLYGNLVRLPKWIGSLNDLAKLKLLGTQL

KQGEIMHLGKLRNLAFLGLWDNSYVGYSLHFGPGTFPKLKFLDIDGLKNIETVAIENGAMPELEQLWVNDCKGLL

DSKDGLSGVPHLTNLNELLVKKCGEKENLMEILQTQVSEHSKRPKFLIEYFVWLVTEESKYPTVKNNNRQAKAKI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	159	467	4.6e-51
NB-ARC [Pfam fs]	204	242	1.5e-09
NB-ARC [Pfam fs]	267	467	2.7e-44
LRR [Pfam ls]	606	627	0.014
LRR [Pfam ls]	628	650	2.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	581	605	2.5
LRR [sensitive, ls]	581	605	64
LRR [sensitive, ls]	606	627	0.00054
LRR [sensitive, ls]	606	627	0.014
LRR [sensitive, ls]	628	650	0.097
LRR [sensitive, ls]	628	650	2.5
LRR [sensitive, ls]	768	791	1.1
LRR [sensitive, ls]	768	791	29
LRR [sensitive, ls]	792	819	0.35
LRR [sensitive, ls]	792	819	9
LRR [sensitive, ls]	838	865	1.7
LRR [sensitive, ls]	838	865	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	6	655	6e-63
RPM1 [A. thaliana]	8	918	2e-84
Pi-ta [Oryza sativa]	25	655	6e-49
Pib [Oryza sativa].	47	349	2e-31
Xa1 [Oryza sativa]	104	811	5e-23
Pib [Oryza sativa].	169	918	1e-122
I2 [L. esculentum]	172	899	4e-38
N [N. glutinosa]	199	965	2e-12
RPS2 [A. thaliana]	205	896	2e-27
M [L. usitatissimum]	206	488	6e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5969.m00120

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)