Report for 5969.m00121

 > 5969.m00121, length: 978, copies: 1 

MEATAVSLARTVLDGVLGGAGSAVADEAALLLGVPREVDFIRSELEMMQSFLRATSGCAGDTARTWVKQVRDLAY

DVEDCLLDFALHAHAHASSSSCAPPLWLRPWRLAERHRVAARIRELKASVEELNQRNHRYHVVPVLAAGDQQQQQ

HEPPAAPPPARGEQHHLRFRDWQVIGRGEEESELAKLISSGGDDDAETRRRVVSVWGMGGMGKSSVARSVYNDPA

IVDGFDCRAWVTVPHPLDSAGEFKRRLVAQLETEVDGGGGGDDVSAWLRQKRYLIVVDDVRSLEEWEHIEPCLVE

SDAGGGRVIVTTRQVDVAQRCVRGMEHAYELKTLAAPHDMRLLCQKVYKDPEYTLQLHMLEEANKILGRCRGLPL

AIATIGGLLANRPKTSAEWKNLRIHLGSELEFDQDINSINRVITSSYDGLPYHLKSCFLYLSIFPENHEIRYTRL

VRRWIAEGYIAKRRDMTVEEVGQKHYNDLMNRSMIRPMKKKIGASMAVERCQVHGMVLQIILSKSIEENQLFIID

KHCNEVPQSKIRHLVVTRWKRSEEKMATNINLSLVRSLTVFGECPASLISPKLRLLRVLDLENAVDLENDDLKHI

GDLHHLRYLGLRGTNISRLPSSLQNLKCLETLDVQDTKVTHLPDGTAKLEKLRYLLAGINFAEDLAEKMQTNAKN

KVNKCNGNLLETLADVVCRCRRGFSECCESSSSCFAGHFSVRAPEGIEKLRNLHMLGVVRIERDSGVAQKLGKLI

SLRRLGVDLDATGEEGKALCNSIQKLARLERLEVRSKSLLFLNDLNGLAPKHLLSLRLYGHLEKLPDWVSSLNDL

AKVKLLETQLEQKDINLLGNLSNLTSLGLWGKSFAGVSLHFSRDMFKNLKSLHIQGLENLETLNFEKSAADRLEK

LLVKKCFALSDNERGISDILFLKNIVEITLISKGDKPHLQKGLQRQVSEFELVNKRRPKLQIVNSMSGRSPRANT

IVG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	158	465	1.5e-48
NB-ARC [Pfam fs]	200	465	5.5e-53
LRR [Pfam ls]	605	627	0.015
LRR [Pfam ls]	628	650	2.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	580	604	1.9
LRR [sensitive, ls]	580	604	48
LRR [sensitive, ls]	605	627	0.00057
LRR [sensitive, ls]	605	627	0.015
LRR [sensitive, ls]	628	650	0.1
LRR [sensitive, ls]	628	650	2.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	8	931	1e-79
Mla1 [Hordeum vulgare].	21	852	2e-67
Pib [Oryza sativa].	47	336	2e-33
Pi-ta [Oryza sativa]	62	640	2e-49
Xa1 [Oryza sativa]	105	657	8e-24
Pib [Oryza sativa].	173	930	1e-117
I2 [L. esculentum]	174	679	2e-34
RPS2 [A. thaliana]	197	655	1e-30
N [N. glutinosa]	201	447	1e-10
M [L. usitatissimum]	202	447	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5969.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)