Report for 5984.m00142

 > 5984.m00142, length: 774, copies: 1 

MGRGGTEGRSSGAGSGHPRAPVAGGKEREEEVASGLPTLSLPVEEVEKEVRGNGRRRRGKVRGKARQRMSGGGRY

IILVDDIWSAKTWKTISDYLLLTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPRDSKELFNRSVSES

KSTKDRHKVQNNVPGDLWKRCGGQPLAIVTMAGLVACNQDQPKSYWAGLHKLLPEEVSITAGAQEQETSLNLDGV

TRILDCCYNNLPGYLRTCLLYLAIFPKGWKISRKCLSRRWIAEGFVNAKQGLTAEEVAESYFNHILRRKLIRPVE

HSSNGKLKTFQVHDMVLDYIVTKAREENFITVVGGHLMMIAPSNNKVRRLSMQSSSSKHGDSTKGMNLSQVRSLT

VFGSLTQLPFHAFNDRIIQVLDFQGLKGFKNRHMKHICKMFVLKYLSLRGTDITHVPPTIVKLEYLETLDIRETR

VKELPKEVEQLKLISRILGGSKNKNPRKGLRLPQEKSKKQQHKSMLTQDKEKEGMKALRILSGIKIDETTAVAGL

HQLTGLKKLTIYKLKLNPEEPGTRKILTELRSSIEYLCSCGLQTLAINEEGQSNFINSLGNMSAPPRYLVALELS

GMLKKPPGWIKTLRTLSKLTLSLTVLRTDTLEHLRALPLFSLTFSFSFGEMEKDQDKKMKDIIEDNKSLSDGEIF

VPGEGFKSLKLLRFFAPLVPKLGFCHNAMPALEMIEMQFQAFEGLFGIDTLGNLKGVRLREAKPREEDKQTAQIN

DLLVRDLKDSTEGLKVIIDHTFTS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	6	276	3.9e-09
NB-ARC [Pfam fs]	72	276	1.7e-20
LRR [Pfam ls]	417	439	5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	417	439	0.21
LRR [sensitive, ls]	417	439	5
LRR [sensitive, ls]	440	462	0.32
LRR [sensitive, ls]	440	462	7.5
LRR [sensitive, ls]	615	638	3.4
LRR [sensitive, ls]	615	638	79

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	47	467	6e-15
I2 [L. esculentum]	48	623	7e-17
RPM1 [A. thaliana]	74	638	3e-33
Mla1 [Hordeum vulgare].	74	458	1e-49
Pi-ta [Oryza sativa]	74	451	1e-43
Xa1 [Oryza sativa]	74	446	2e-13
Pib [Oryza sativa].	76	744	3e-53

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5984.m00142

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)