Report for 5996.m00139

 > 5996.m00139, length: 1081, copies: 1 

MEIFLSAILGDLASRSISFLINKCSKPTVLTVEEKLQRLLLQACFIVEESDERLIINQAMLQQLNILRKEMYRGY

YTLDSFRCHGHQEYNPKDLEVSSSFAPSMFNPAKRVRFCRVTGQSVQEHLLQQVFGRLEVTIEDMSEFVMFLNSY

PRFCRQPYSMHLLLDECLFSRQMEMEHIMNFLLKEDTTGTENPGVLPIIGPGKVGKSTLIEHACDDERVRNHFSQ

IVLFNDDDLEDANILTLRDSGVIKHQNHATGGKRILIIIELTRDINEGAWRRLYSASKSHVASGSKIIVASRSEK

IASFGTTQALRVKFFTQEAYWYFFKVRTFGSINAVEHPKLASVAMDIARELNGCFMGASIYSGLLKANINFQFWR

RALAIIREFKKLNLLLYGAYFFDDPWQAVEPSYIRTVNKINSEYLLVLDDYQICSAPNMIHCHKNSAHSEDEVPM

VNVKDFLFGNVKPQGKFKVLAWRSHLPPHYSYVFNYTQSILILNRRQCKHFVAVSEAIPAMDNTLVATSARVLPT

MLAPDGDASLLSVSALDPVHTEKFPGYIVFSQLPVLVDPLSDLQNFRLHTSLMETFLSVILSDLATKSISFLINK

CSKPTASNMEERLQRLLLRAQIIVEEAEDRLITNQRMLLQLNILRKEMFRGYYALDRFRCRGHEEDDAKDHQVSN

SFAQSKFNPAKSVRFFRISGHSLQEQLQQVVGSIEVTLEDMSVFVMFLNSCPHLCRQPYSMHLLLDKCLFGRQME

IERIMNFLLKVDSPGSENPGVLPIIGRRKAGKSTLIEHACNDERVRNHFSQIVCFSDDDLKDADMVTLRHCGSIK

NGNQCTGGERILIVIELIRDIDEVVWTRLYSASKSYVPNGSKIIVASQSDKIARFGTTQALRVELFTEEAYWYFF

KVRTFGSMDAQEHPKMASMAMEMARELQGCFMGASIYSGLLKANFNARFWNMALASIREYKQTNLLVYGTYFENP

WQASEPPYVRTVNKISSEYLVIHDEYHTCSVQNMVLCRTNFTRSEAEVPMLSMQDFLFGSVRPQGKFKVLAWKSH

LPPYYNHMFNCEVQRKHHVVAKKKRSLELCS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	155	420	8.4e-06
NB-ARC [Pfam fs]	168	223	3.4e-06
NB-ARC [Pfam fs]	744	799	4.8e-06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	113	378	2e-18
Xa1 [Oryza sativa]	163	374	3e-15
I2 [L. esculentum]	611	956	1e-17
Xa1 [Oryza sativa]	739	956	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	611	631

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5996.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)