Report for 6000.m00115

 > 6000.m00115, length: 981, copies: 1 

MEATAVSLARSVLDVVLSSVGPAVADEVARFLGVPKEVKFIRNELEMMQAFIKTASSSLHPDAAATAGGGDNDIL

RTWVKQVRDLAYDIEDCLLDFALYAARISSSPTGSSWLRPGPLAARGRIADRIRELKASVEELNQLRLRYHIVVD

DHHHPSRTYHERVVAMLPGGHGSSSDELAFQESEIIGRAGEKEQLKDLISRCSGSPSPSVVAVWGMGGMGKSSLV

RMVHNNPAVLDVFDCSAWVTVPHPLDGADEFRRRLRKQLGLGLGAAAGDDQNVIQDYLREKRYIIMVDDLLSQEE

WDQIWQVLKPLNNKGSVVIVTTRRKDVAGHCAGLAPEEHGHVYELKRLDDKQSKDLLCRKVYRTPNYTLPEDMKP

HISRILKGCWGLPLAISTIGGLLANRPKTGMEWKKLHEHLGVELESDQLQDITKVLVSSYHGLPYHLKPIFLYLS

IFPENNEIRRTRLLRRWIAEGYIANNRDMPVEVVGERFFNELINRSMIQSSKVSHGLKVDRCRVHGMMLHIILSK

SIDENQLFVIKKHCNEVPQSKIRHLVVNRWKKRDEKLENINLSLIRSLTVFGECPASLITLEMRMLRVLDLEDMA

NLKNEDLKHIGKLRHLRYLGLRGTDISKLPSSLQNLLYLETLDIQDTQVTQLPDGIAKLEKLRYLLAGVNFSRDL

LQKMPQFGMENHNSNLLGNLASCLYCYNTQSCEISGMDQFSVMVPEGIEKLRNLHMLSVVNVRKSKDVAGKLERL

TNLQRLGVTGLGQEEGKELWNSIKNLNRLQRLEVRSESLDFLVNNKDIDATPPKYLVSLRLCGLLDELPVWIKSL

NDLTKVKLIGTQLKQDDIHRLKDLRILASLGLWEKSYKEKSLIFNDGTFRKLIFLDIDGLEIIETVNIEKGAMPE

LQQLWVNRCQKLSDDDNGLSGVLHLLNLNELVLKKCGPKEKLVQLLQSQLSTHVKRPKFLVGKSISPTSSEASTS

TATQTG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	169	478	2.5e-47
NB-ARC [Pfam ls]	169	478	6.1e-47
LRR [Pfam ls]	615	637	0.18
LRR [Pfam ls]	638	660	3.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	590	614	3.5
LRR [sensitive, ls]	590	614	78
LRR [sensitive, ls]	615	637	0.0081
LRR [sensitive, ls]	615	637	0.18
LRR [sensitive, ls]	638	660	0.14
LRR [sensitive, ls]	638	660	3.1
LRR [sensitive, ls]	900	927	4
LRR [sensitive, ls]	900	927	89

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	6	961	3e-64
RPM1 [A. thaliana]	8	960	6e-76
Pib [Oryza sativa].	71	353	4e-29
I2 [L. esculentum]	72	950	3e-34
Pi-ta [Oryza sativa]	78	643	1e-48
M [L. usitatissimum]	174	950	3e-12
RPS2 [A. thaliana]	175	851	9e-26
Pib [Oryza sativa].	179	940	1e-117
Xa1 [Oryza sativa]	182	824	1e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6000.m00115

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)