Report for 6000.m00117

 > 6000.m00117, length: 919, copies: 1 

MLGVEKERKIWIEMGPITIVVSTLKYEYAIEKLKSTGFGILERCGGLLVAIKAIAGLLNHKEINKIEWGKYQVLH

GFVNGKSNEPEELGKEYYNELIIRNLIQAMPNSEWSMHDVGRSFCQHLAKDEALSSQMGQLRVSDILKWREYEIA

STLKDEYAIEKLKSTGFRILERCGGLPLAIKAIAGLLNHKEINEIEWGKVLRSPSWLVDGMPEEINHAIYLSYDD

LDPHLKQCLLYCSLFPKYGKPNKHLIVEVWISEGFVNGKSNEPEELGKEYYNELIIRNLLQTMPGDNNNWTMHDV

VRSFCRHVAKDEALPFHMEHLRVTDLDSNRYRWLCIQNELDWSAWQEQNSVRTLFFYGSTHIKLKANDLCSKFSN

LRVLSIVYAQLATFDSLCQLKNLRHLYFSRTDIRSLPDGIGKMKFLEYIGITCCEQIQQLPGSIIKLERLRSLNL

MGTNIKSIPRGFGRLTSLRTLYSFPAQMGSSSSKDEWCSLEELGPLSQLRDLHIKGLENVSASSSAAKAMLGAKK

HLAIWWLECTDRQRDDGFLKEEGIISIDEQRRIKEVFDELCPSYCLEQLYIRGYFGWQLPKWMTSKASVRLDRLT

SLKLDGLPCCTKLPDGLCQLSCLKLLQIRRAPAIERIGHEFLQIQQHNGDCHPSRAAVAFPILETLEFTVVLELE

EWVWEEHIQAMPLLHELTLDRALSVLKLFMVHNLKSLQNLPSVVELHLYKNPDMESIRGVPKLQVLSINYCPKLK

LLEGIPALQKLYLLDFSMKTLPGYLQDVKPKSLVLDCSLPLLGNISMGASCSDWDKISHIQQISGYAGEMRIRRR

WYVFYTREPFKLDTNIVCSSISRGLNRSLRRKPFISSSVWIFLINLSCIAGIIDGLLKDKERRAKELRMVKLLCA

LLAVVGFVSILPHCYGLLL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	5	267	9.2e-09
NB-ARC [Pfam fs]	166	267	3.7e-25
LRR [Pfam ls]	397	419	0.057
LRR [Pfam ls]	444	466	0.096

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	350	374	4
LRR [sensitive, ls]	350	374	90
LRR [sensitive, ls]	375	396	0.65
LRR [sensitive, ls]	375	396	15
LRR [sensitive, ls]	397	419	0.0025
LRR [sensitive, ls]	397	419	0.057
LRR [sensitive, ls]	420	443	2.1
LRR [sensitive, ls]	420	443	48
LRR [sensitive, ls]	444	466	0.0043
LRR [sensitive, ls]	444	466	0.096
LRR [sensitive, ls]	598	621	1.1
LRR [sensitive, ls]	598	621	25
LRR [sensitive, ls]	737	762	0.68
LRR [sensitive, ls]	737	762	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	86	751	2e-45
RPS2 [A. thaliana]	128	450	1e-16
Xa1 [Oryza sativa]	130	797	3e-28
Mla1 [Hordeum vulgare].	132	504	1e-25
Pib [Oryza sativa].	141	473	6e-18
RPM1 [A. thaliana]	160	750	1e-32
Pi-ta [Oryza sativa]	169	499	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	860	882	out -> in
putative TM domain	895	917	in -> out

Report for 6000.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)