Report for 6001.m00154

 > 6001.m00154, length: 946, copies: 1 

MEAVVCASHGAVGSLLWKLSALLSDEYNLLTGVKSNIMFLKAELESIDVFLKKMYEFEDPDEQSLFWMKEFRELS

YDIEDIIDASMFSLGHESNRRPRGFKGFAGRCMDFLTNVKTRHWIAKKIHCLKCCVIEASNRRARYKVDGSVSKL

SRTSLDPRLPAFYTETTRLVGIDGPRDKLIKMLVEGDDALVHQLKVVSIVGFGGLGKTTLANEVCRKLEGQFKYQ

AFVSVSQKPDIKKILRHILSQICWRECISDEAWDEQQLIHTIRQFLKDKRYFIVIDDIWSTSAWRTIKCAFPENN

CSSRILTTTRIIAVAKYCCSPHHDNVYEIKPLGAIHSKSLFFKRTFGSEDKCPLHLKEVSNAILRKCGGLPLGII

TVASLLANKASTKEEWESIHNSIGSALEKDTDMEEMKRILLLSYDDLPYHLKTCLLYLSIIPEDYEIKRDRLIRR

WIAEGFIPTEGVHDMEEVGECYFNDLINRSMILPVNIQYDGRADACRVHDMILDLIISISVKENFVTLHGDQNYK

IVQQNKVRRLSLNYHAREDIMIPSSMIVSHVRSLTIFGYAEHMPALSKLQFMRVLDVENKMVLDHSFLKHIHRLS

QLKYLRLNVRRITALPEQLGELQNLQTLDLRWTQIKKLPSSIVRLQKLVCLRVNSLELPEGIGNLQALQELSEIE

INHNTSVYSLQELGNLKKLRILGLNWSISDSNCDIKIYADNLVTSLCKLGMFNLRSIQIQGYHIISLDFLLDSWF

PPPHLLQKFEMSISYFFPRIPKWIESLEYLSYLDIYINPVDEETFQILAGLPSLIFLWISSRAATPKKGLIISYN

GFQCLRELYFTCWESKTGMMFEAGAMPKLEKLRVPYNACDICSLNGGMDFGIQHLCSLKHLHVEIICRGAKLQEV

EALENAIKSAAGLLSDELTFEVSRWDEEEIIDMDQELAEDDFDTIN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	154	462	2.3e-63
NB-ARC [Pfam ls]	154	462	1e-63
LRR [Pfam ls]	624	646	1.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	601	623	0.97
LRR [sensitive, ls]	601	623	22
LRR [sensitive, ls]	624	646	0.064
LRR [sensitive, ls]	624	646	1.4
LRR [sensitive, ls]	670	692	0.66
LRR [sensitive, ls]	670	692	15
LRR [sensitive, ls]	779	802	4.4
LRR [sensitive, ls]	779	802	99

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	1	697	8e-94
Mla1 [Hordeum vulgare].	10	910	1e-150
RPM1 [A. thaliana]	18	888	2e-75
I2 [L. esculentum]	40	888	2e-42
Pib [Oryza sativa].	50	344	3e-11
Xa1 [Oryza sativa]	114	694	1e-36
RPS2 [A. thaliana]	120	756	3e-25
N [N. glutinosa]	140	804	1e-10
Pib [Oryza sativa].	143	648	9e-72
M [L. usitatissimum]	162	431	8e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6001.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)