Report for 6006.m00106

 > 6006.m00106, length: 997, copies: 1 

MSTMVVSAYKGVIDSVLAKLRELMGGDMCANLIGVSSRDILFLRDELPAMSALLEKLDDAEELDSEAKNWRNQVR

EMTYDIEDCIDDFSNNITSVDAKTGFLYKASQFLKTCRAHLEAAWQIKELKTRLQEINERRKRYKVGHYISNTTS

VTVDPRISAFYKETAGLVGIDSPKRELTKLVMDEETQLKVMSIVGFGGLGKTTLASQVYREVGVQFNCKAFVSVS

QKPDMVRLLTSLLLQLKQHPSHACGVQELIDNLREYLMDKRYFIVVDDLWDVPSWNIITCAFPQNNQHSRVIITT

RHGDVARTCSSDHGSINNMKPLSAQNSRELFFNRIFGSKDYCPSYLEEVSCKILKKCGGLPLAIVTVASILACQP

TRLKEEWEYIQSSLATNKFARKSTLEDMMQILELSYKSLPHHLKACFLYLGAYPEDCVISKVDLIKRWVAEGFVS

HSPGQDAWVVAESYFNELVNRSMIQLPYQGYYNEVSHCKVHDMMLDMILMRCKEDNFISVIQDPRAAIEVQDKIR

RLTIDLNGAMGDTMDMNITRKVSQVRSLGVFGGSKWIPPLLEFKFLRVLFLEFFLREMIIDLTGINQLSQLRYLK

VECKECLMDGDIPSQVSIVLPSQIRRLQHLETLELPWVSKCSIPSISGIIDLPRLTHLVLRQHKGGLPDGIRKLK

SLRTLHGFNLPVSSLENIDALGELTSLADMSLHCGKQDTKSTTPGWMTALSCSIEKLGNLKGLYVRSNSPSCCAD

AMSSWFSPPFLNLEKLDLLDWTFSKVPRWIGQLHSLRELALGGKKILQEDVSMIGTMLPFLTHLSLRIVTCNIAV

KESRIMIEGSIGFAALRFFCFDSNRMSHLEFGVGAMPQLKRLLLALDPWEWDEATPVGLKHLLYLEEIRVLTAST

AVASAGSESMNGKSALVKGVFHDAANALQSRPAFTVLPRIRSLSDHLHINDAEGILVIGVPPNVTTYMGQESDHH

GIFFHGFVGLNVSGFMGENVQE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	152	454	2.1e-68
NB-ARC [Pfam ls]	152	454	5.9e-69

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	11	871	1e-109
I2 [L. esculentum]	43	702	1e-36
Pib [Oryza sativa].	50	334	7e-21
Pi-ta [Oryza sativa]	58	703	1e-96
RPM1 [A. thaliana]	75	899	3e-56
Xa1 [Oryza sativa]	120	703	4e-32
M [L. usitatissimum]	145	428	5e-13
Pib [Oryza sativa].	156	867	1e-64
L6 [L. usitatissimum]	163	428	6e-14
RPS2 [A. thaliana]	182	702	1e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	58	78
putative coiled-coil	121	141

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6006.m00106

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)