Report for 6012.m00036

 > 6012.m00036, length: 417, copies: 1 

VVECNRVVVDASTTIQHLGTGIAGFVRHSPPRLPQMRAAYRLTAMLAMLPILLVDIQPMAAPVPCLPGQASALLQ

LKRSFDATVGDYSAAFRSWAAAGTDCCSWEGVRCGGGGDGRVTSLDLRGRELQAESLDAALFGLTSLEYLDISRN

NFSMSQLPSTGFEKLTELTHLDLSDTNFAGRVPAGIGRLTRLSYLDLSTAFGEDEMDDDEENSVMYYSSDEISQL

WVPSLETLLTNLTRLEVLRLGMVNLSSNGERWCDAMARFSPNLQVISMPYCSLSGPICRSLSSLRSLSVIELHFN

QLSGPVPEFLAALSNLTVLQLSNNMFEGVFPPIILQHEKLTTINLTKNLGISGNFPNFSADSNLQSLSVSKTNFS

GTIPSSISNLKSLKELDLGVSGLSGVLPSSIVVACPDPYQLP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	141	166	0.0096
LRR [Pfam ls]	167	190	1.2
LRR [Pfam ls]	267	290	6.2
LRR [Pfam ls]	291	314	0.57
LRR [Pfam ls]	315	338	3.3
LRR [Pfam ls]	363	386	0.12

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	116	140	0.85
LRR [sensitive, ls]	116	140	19
LRR [sensitive, ls]	141	166	0.00043
LRR [sensitive, ls]	141	166	0.0096
LRR [sensitive, ls]	167	190	0.052
LRR [sensitive, ls]	167	190	1.2
LRR [sensitive, ls]	267	290	0.28
LRR [sensitive, ls]	267	290	6.2
LRR [sensitive, ls]	291	314	0.026
LRR [sensitive, ls]	291	314	0.57
LRR [sensitive, ls]	315	338	0.15
LRR [sensitive, ls]	315	338	3.3
LRR [sensitive, ls]	339	362	0.98
LRR [sensitive, ls]	339	362	22
LRR [sensitive, ls]	363	386	0.0055
LRR [sensitive, ls]	363	386	0.12
LRR [sensitive, ls]	387	411	0.75
LRR [sensitive, ls]	387	411	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	46	406	3e-16
CLV2 [A. thaliana]	58	407	3e-23
Cf-9 [L. pimpinellifolium]	62	406	1e-24
Xa21 [O. sativa]	68	406	1e-15
FLS2 [A.thaliana]	102	406	2e-21
FLS2 [A.thaliana]	116	405	2e-18
Cf-9 [L. pimpinellifolium]	117	407	7e-23
Cf-9 [L. pimpinellifolium]	120	392	8e-14
CLV2 [A. thaliana]	132	403	1e-15
FLS2 [A.thaliana]	132	409	1e-18
FLS2 [A.thaliana]	137	406	1e-16
CLV2 [A. thaliana]	142	366	7e-13
FLS2 [A.thaliana]	165	403	9e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6012.m00036

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)