Report for 6064.m00109

 > 6064.m00109, length: 760, copies: 1 

MGDARELPQGHGMDLRQDATARRWLNSLRDVAYDAEDLIESAVLQQQGDRYSAVNSVLHPISRYRSAQKVEEIRW

RSSSYHIGNNTIFGLEQDTDMIMERLLQPTEHREVIVIVGMGGIGKTTLASLVFNKARGVEERNTWSGQAPPKAT

DPGSSSKRSHFDVCAWVPVGQDPDTLHLFSTISIQIGANLDLSRDVAEIKHHMFTFLLDKRYLIVLDDVWREETW

HELVDAFPMSTNGSKILMTTRSKVIAISADPASYPHELNPLSDEVSFHLFLSKVFPNSNLNQAMSYPPLMEDLGR

QLSKKCGGLPLALVVLGGLLSAKEKKHDVWSSILNSMNWNDNEAEKQCLKILALSYDDLPYRAFREESEISISKL

TKLWIGDDLIPQQSGRRRKEDTATDYLNELIQRCLVQPVLLKHKQRSTRVIRPFFPLIFRWCRINWQTVWSMPYI

RVIEVEGLMMPTDALRSIQSSLIHLRYLCLRNTQLVAFPFNESKFPSLQTLDIRETSVKKLPDTIWALKTLRHLY

LNGMEPPSIRCLTNLQTFCGVLVSNDQIAMEFLTLKDLRKLQIELKAWNGYPLLVKSLKLLLALTSFKLSSTEIS

SEVINKIAHHSPLRKLHLQGMLHPPVLTLSEYFSDYITSITLSASRIGTDQLKTLGSLTCLWELKLKDDALLPCP

QHSFPQLGYLKISSLTNLEAFRIERGAFSNLVRFSVHYCSKFRSIIDVLEHTTSLQVLKLKGMELLPDITDSCRN

KNVSVITMAY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	71	138	7.2e-14
NB-ARC [Pfam ls]	71	390	3.3e-63
NB-ARC [Pfam fs]	154	390	4.5e-50
LRR [Pfam ls]	497	519	4.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	474	496	0.66
LRR [sensitive, ls]	474	496	15
LRR [sensitive, ls]	497	519	0.2
LRR [sensitive, ls]	497	519	4.5
LRR [sensitive, ls]	705	728	2
LRR [sensitive, ls]	705	728	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	10	735	1e-41
Mla1 [Hordeum vulgare].	18	414	6e-31
Pi-ta [Oryza sativa]	18	438	5e-25
I2 [L. esculentum]	20	568	2e-33
Xa1 [Oryza sativa]	53	430	3e-17
Pib [Oryza sativa].	74	413	2e-17
RPS2 [A. thaliana]	82	735	7e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6064.m00109

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)