Report for 6115.m00152

 > 6115.m00152, length: 843, copies: 1 

MEGARCFIRISRVYFCLPCDRLRRDRVILISNLLRNFGASPSTSFSMATILGSLIGSCVNKLQGIITEEAILILG

VEEELKKLQKRMKQIQCFLSDAERRGMEDSAVHNWVSWLKDAMYDADDIIDLASFEGSKLLNGHSSSPRKTTACG

GLSPLSCFSNIQVRHEIGDKIRSLNRKLAEIEKDKIFATLKNAQPADKGSTSELRKTSHIVEPNLVGKEILKVSR

NLHRVDQMSPADGWELLWKSISIQDEKEVQNLRDIGIKIIQKCGGLPLAIKVIARVLASKDKTENEWKRILDKNV

WSMAKLPKEIRGALYLSYDDLPQHLKQCFLYCIVFPEDWTIHRDYLIRMWVAEGFVEVHKDQLLEDTAEEYYYEL

ISRNLLQPVNTSFDKSQCKMHDLLRQLACYISREECYIGDPTSCVDNNMCKLRRILVITEKDMVVIPSMGKEEIK

LRTFRTQQHPVGIENTIFMRFMYLRVLDLSDLLVEKIPDCIGHLIHLHLLDLDRTCISCLPESIGALKNLQMLHL

HRCKSLHSLPTAITQLYNLRRLDIVETPINQVPKGIGRLKFLNDLEGFPVSGGSDNAKMQDGWNLEELADLSKLR

RLIMINLERGTPHSGVDPFLLTEKKYLKVLNLWCTEQTDEAYSEENASNVENIFEMLTPPHNLRDLVIGYFFGCR

FPTWLGTTHLPSVKSMILANCKSCVHLPPIGQLPNLNYLKIIGASAITKIGPEFVGCREGNLISTEAVAFPKLEM

LIIKDMPNWEEWSFVEQEEEEVQEEEAVAAAKEGGEDGTVASKQKGKVALSPRSSWLMPCLRRLDLWDCPKLRAL

PPQLGQTNLKELLIRYTS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	61	361	2.2e-11
NB-ARC [Pfam fs]	228	361	2.1e-39
LRR [Pfam ls]	496	518	0.99
LRR [Pfam ls]	810	833	4.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	473	495	0.51
LRR [sensitive, ls]	473	495	5.6
LRR [sensitive, ls]	496	518	0.09
LRR [sensitive, ls]	496	518	0.99
LRR [sensitive, ls]	519	542	0.88
LRR [sensitive, ls]	519	542	9.6
LRR [sensitive, ls]	543	565	0.55
LRR [sensitive, ls]	543	565	6.1
LRR [sensitive, ls]	687	709	3.7
LRR [sensitive, ls]	687	709	40
LRR [sensitive, ls]	710	733	4.8
LRR [sensitive, ls]	710	733	53
LRR [sensitive, ls]	810	833	0.45
LRR [sensitive, ls]	810	833	4.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	166	839	1e-62
RPM1 [A. thaliana]	172	547	8e-36
Xa1 [Oryza sativa]	180	723	1e-28
Pib [Oryza sativa].	204	527	2e-26
Pi-ta [Oryza sativa]	224	568	9e-24
Mla1 [Hordeum vulgare].	226	697	2e-36
RPS2 [A. thaliana]	229	549	9e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	71	91
putative coiled-coil	165	185

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6115.m00152

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)