Report for 6115.m00156

 > 6115.m00156, length: 1033, copies: 1 

MATIVDTLVGSCINKLQAIITDKTILILGVKDELEELQRRTNVIRSSLQDAEARRMEDSVVEKWLDQLRDVMYDV

DDIIDLARFKGSVLLPDYPMSSSRKATACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDEVFLKLNRRHH

NGSGSAWTPIESSSLVEPNLVGKEVIRACREVVDLVLAHKKKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFD

HHAWACVSKEYSRDSLLRQVLRNMGIRYEQDESVPELQRKIKSHIANKSFFLVLDDVWNSEAWTDLLSTPLHAAA

TGVILITTRDDTIARVIGVDHTHRVDLMSADVGWELLWRSMNINQEKQVQNLKDIGIEIVRKCGGLPLAIRVIAT

VLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPHQLKQCFLYCALFPEDASILRDDLTRMWVAEGF

IDEEKGQLLEDTAERYYYELIHRNLLQPDGLYFDHSSCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRI

SVVTEKDIVVLPSMDKDQYKVRCFTNLSGKSARIDNSLFERLVCLRILDLSDSLVHDIPGAIGNLIYLRLLDLDK

TNICSLPEAIGSLQSLQILNLQGCESLRRLPLATTQLCNLRRLGLAGTPINLVPKGIGRLKFLNDLEGFPIGGGN

DNTKIQDGWNLEELAHLSQLRQLGMIKLERATPCSSRDPFLLTEKKHLKVLNLHCTEQTDEAYSEEGISNVEKIF

EKLAPPHNLEVLAIVNFFGRRFPTWLGTNHLSSVKYVLLIDCKSCVHLPPIGQLPNLKYLKINGASAITKIGPEF

VGCWEGNLRSTEAVAFPKLEWLVIEDMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGIAASKQKGEEAPSPTPRS

SWLLPCLTKLDLVGCPKLRALPPQLGQQATNLKDLLIREAECLKTVEDLPFLSGALSIGGCEGLERVSNLPQVRE

LFLNVCPNLRHVEELGGLEQLLLDEGMQEISQLWVPRLQEQHRQLHGDEHELEVIEWL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	155	456	4.7e-68
NB-ARC [Pfam fs]	191	456	2.6e-68
LRR [Pfam ls]	569	591	0.75
LRR [Pfam ls]	592	614	1.4
LRR [Pfam ls]	906	930	3.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	569	591	0.068
LRR [sensitive, ls]	569	591	0.75
LRR [sensitive, ls]	592	614	0.13
LRR [sensitive, ls]	592	614	1.4
LRR [sensitive, ls]	615	638	0.56
LRR [sensitive, ls]	615	638	6.1
LRR [sensitive, ls]	639	661	0.87
LRR [sensitive, ls]	639	661	9.5
LRR [sensitive, ls]	806	830	1
LRR [sensitive, ls]	806	830	11
LRR [sensitive, ls]	906	930	0.29
LRR [sensitive, ls]	906	930	3.2
LRR [sensitive, ls]	972	994	1.3
LRR [sensitive, ls]	972	994	14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	793	6e-58
RPM1 [A. thaliana]	13	851	6e-60
I2 [L. esculentum]	34	858	7e-88
Pib [Oryza sativa].	43	291	8e-12
Pi-ta [Oryza sativa]	58	666	1e-40
Xa1 [Oryza sativa]	146	1022	1e-48
L6 [L. usitatissimum]	153	1015	4e-11
M [L. usitatissimum]	153	1015	3e-17
Pib [Oryza sativa].	167	893	1e-40
N [N. glutinosa]	169	838	4e-13
RPP5 [A. thaliana]	176	984	3e-12
RPS2 [A. thaliana]	181	631	7e-40

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	31	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6115.m00156

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)