Report for 6115.m00159

 > 6115.m00159, length: 965, copies: 1 

MATILDSLVGSCANKLKEIITEEVILILGIQEELAELQRKTELIHCCISDGCDAEARRMEESAVDNWLARHEVAV

KIRSLNRKIENISKDRVFLTLKSTVPTGSSSVLRVRKSSHLLEPNIVGKEIIHACRKMVDLVLEHKGRKLYKLAI

VGTGGVGKTTLAQKIYNDRKIKGSFNKKAWVCVSKVYSKASLLRELLRIMEVHHDQDESIGELQSKLEIAIKETS

FFLVLDDMWQSDAWTNLLRIPLHAAEMGAILITTRNNIVALEIGVDHTYRVDLMSTDVGWELLCKSMNISESIEL

QTLQDVGIEIVRKCGCLPLAIKVIARVLASKEQTENEWKKILSKNAWFMNNLPNDLRGALYLSYDELPRHLKQCF

LYCSVYPEDANIYHDDLTRMWIAEGFIEDHGGQLLEETADEYYYELIHRNLLQPDGLYYDHSSCKMHDLLRQLAC

YLSREECFVGNPESLVGNTVSKLRRVSVVTDKNMVMLPSMDEVQYKVRTWKTSYEKTLRVDNSFFKRFPYLRVLD

LTDSFVPSIPGCIGNLIHLRLLDLDGTNVSCLPESIGNLKNLQILNLERSVALHSLPSAITQLCNLRRLGLNYSP

IYQVPKGIGKLEFLNDVEGFPVYGGSSNTKMQDGWNLEELAYLYQLRRLHMIKLERAAYRTTYPLLTDKGFLKFL

YLWCTERTDEPYTEKDFSNIEKIFEQLIPPCNLEDLAIVKFFGRQYPFWIDSTHLAYVKSLHLFNCKFCMHLPPV

GQLPNLKYLKIEGAAAVTIIGPEFAGHRASNLGRTVAFPKLEELLIRDMPNWEEWFFIDEATSTAKERVDDGDSA

IPKEKALPPRMQILSRLRRLELSGCPKLKALPQQLAQINSLKEIELRWASSLKVVENFPLLSEMLLIATCQALEK

VSNLPQVRELRVQDCPNLRLVEDLSTLEQLWLYEDMHEVSTLWVPGLQQQCRQHHGEDLEVYNWT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	106	407	3e-63
NB-ARC [Pfam fs]	148	407	5.8e-67
LRR [Pfam ls]	543	565	0.029
LRR [Pfam ls]	841	864	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	520	542	1.2
LRR [sensitive, ls]	520	542	14
LRR [sensitive, ls]	543	565	0.0026
LRR [sensitive, ls]	543	565	0.029
LRR [sensitive, ls]	566	589	0.74
LRR [sensitive, ls]	566	589	8.1
LRR [sensitive, ls]	590	612	0.67
LRR [sensitive, ls]	590	612	7.4
LRR [sensitive, ls]	732	754	1.9
LRR [sensitive, ls]	732	754	21
LRR [sensitive, ls]	755	778	3.8
LRR [sensitive, ls]	755	778	41
LRR [sensitive, ls]	841	864	0.18
LRR [sensitive, ls]	841	864	1.9
LRR [sensitive, ls]	865	887	6.8
LRR [sensitive, ls]	865	887	74
LRR [sensitive, ls]	906	928	2.6
LRR [sensitive, ls]	906	928	29

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	742	2e-55
RPM1 [A. thaliana]	69	699	6e-52
Xa1 [Oryza sativa]	72	870	4e-52
I2 [L. esculentum]	105	960	4e-82
Pib [Oryza sativa].	106	592	6e-36
N [N. glutinosa]	120	615	1e-10
Pi-ta [Oryza sativa]	121	614	1e-36
RPS2 [A. thaliana]	133	859	1e-46
RPP5 [A. thaliana]	136	930	9e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6115.m00159

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)