Report for 6115.m00160

 > 6115.m00160, length: 833, copies: 1 

MATIVDTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIRYSLQDAEARRMKDSAVQKWLDQLRDVMYDV

DDIIDLARFKGSVLLPNYPMSSSRKSTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDDVFLKLSLTQH

NGSGSAWTPIESSSLVEPNLVGKEVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFD

HRAWVCVSKEYSMVSLLAQVLSNMKIHYEKNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAA

TGIILVTTRDETIARVIGVDRTHRVDLMSADIGWELLWRSMQHQRRETSEKSTGHRAIAKVLASLQDQTENEWRQ

ILGKNAWSMSKLPDELNGALYLSYEVLPHQLKQCFLYCALFPEDATIFCGDLTRMWVAEGFIDEQEGQLLEDTAE

RCKMHDLLRQLASYLSREECFVGDPESLGTNTMCKVRRISVVTEKDIVVLPSMDKDQYKVRTNICSLPEAIGSLQ

SLQILNLQGTDEAYSEEGISNVEKIFEKLEPPHNLEDLVIGDFFGRRFPTWLGSTHLSSVKYVLLIDCKSCVHLP

PIGQLPNLKYLKINGASAITKIGPEFVGCWEGNLRSTEAVAFPKLEWLVIKDMPKWEEWSFVEEEEVQEEAAAAA

KEGGEDGIAASKQKGEEAPSPTPRSSWLLPCLTKLDLVGCPKLRALPPQLGQQATNLKKLFIRDTRYLKTVEDLP

FLSGGLQVEGCEGLERVSNLPQVRELFVNECPNLRHVEELGGLEQLWLDEGMQEISSLWVPRLQEQHRQLHGDEH

ELEVTEWL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	155	442	2.7e-49
NB-ARC [Pfam fs]	197	337	6.8e-35
NB-ARC [Pfam fs]	357	442	5e-17
LRR [Pfam ls]	706	730	3.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	607	631	1
LRR [sensitive, ls]	607	631	11
LRR [sensitive, ls]	706	730	0.29
LRR [sensitive, ls]	706	730	3.2
LRR [sensitive, ls]	731	753	2.6
LRR [sensitive, ls]	731	753	29
LRR [sensitive, ls]	772	794	0.98
LRR [sensitive, ls]	772	794	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	613	5e-31
RPM1 [A. thaliana]	13	589	1e-30
I2 [L. esculentum]	34	490	4e-39
Pi-ta [Oryza sativa]	58	449	4e-25
Xa1 [Oryza sativa]	152	494	3e-33
Pib [Oryza sativa].	167	472	7e-21
RPS2 [A. thaliana]	197	469	2e-22
I2 [L. esculentum]	530	659	6e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6115.m00160

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)