Report for 6134.m00188

 > 6134.m00188, length: 1141, copies: 1 

MAQILGGLVNIVVTPIYNAIFKHALYPFKVTRNVENLEKATKKLIAKRDDVENKISNDERSGMRIKSEARRWLED

VNTTISEEADINQKYESRGMTFGGCSMNCWSNYKISKRASQKLLEVKEHYIADMSVVGDQPSPEPVQKIPIPCDH

VMDNDNNLREALDYIKNDPVGIIGIWGVGGVGKTHLLNKINNSFLGDSSFHSIIYVIASKECSVQKIQAEIVKKL

NLRKDDDVKFQAHIISEFLDGKNFLLLLDDLWERIDLLEVGIPTLGIENNLKRKVVLTTRSQDVCGQMEVRKQIK

VACLRDEEAWKLFLEKVDEETLPSSSLIELAKQVVKELKGLPLALVTVGRAMYAKRDPVLWEHTIDYMKGACRDK

DGPLSMETVFRQLKFSYDSLRNDTLKRCFLTCALWPEDVFIATDELDQCWMGLGLVDKDDIQSSYREACNVRSEL

QSACLLESWHTSRVITMHDVVRDMALWICCGCSEKNDNWVVHAQVGKNLSRRTIPWSKAECVSLMWNRIEELPPM

DSNYFPAKLRTLCLQGNRLDGRIVETLKNFTALTYLDLCSNSLTNIPGEICALANLEYLDLGYNSGICEVPTCFR

ELSKLKFLYLSCTNVWRIPEDVISSLKALQVIDLTPKPKPWNRYGNRENHADHMPSVVLIQELTKLSKLKAVGIT

VESVSSYEALKEYPNLPIRRLVLNIEERESVFYLLTGPLSDHLAQMTLHKLEIYRSSMEEIIIERHESGGHLEQN

YSFDALNQLDLQFLENLKVITWKGIRPELLFHRLTVLYTIDCDQLEDISWALHLPFLEELWVQGCGKMRHAIRNI

SKQESSMQSIDTFPRLVSMLFANNDGLVSICDSDVTFPSLKSLRVTNCENLKRLPFRRQQSLPPKLQVIYSDSVE

WWDNLEWEEEEQVVVIRDLRRDPRVVLARAARGRNPSRPRRHTLIPLLHLAAAGTRRRQSRRRAEKAAAWPKRLG

GTGPCASRTENADDGAAGGGDGGSTWGGGSGAPMAGSGFPTHGSGRRGERRDGGGVGGERRVRALPARRAAWACP

AGAAGGETGSATDAVWAAGGATRALASAAATRVGVAAATAPAPALPRAPARCRCRMACRRKARPAGRARRRPVVC

EVVLARHAALAQWPVA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	134	436	6.9e-56
NB-ARC [Pfam fs]	170	436	3.2e-57
LRR [Pfam ls]	533	556	1.8
LRR [Pfam ls]	557	579	0.41
LRR [Pfam ls]	580	603	0.44
LRR [Pfam ls]	604	627	0.02

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	533	556	0.067
LRR [sensitive, ls]	533	556	1.8
LRR [sensitive, ls]	557	579	0.015
LRR [sensitive, ls]	557	579	0.41
LRR [sensitive, ls]	580	603	0.016
LRR [sensitive, ls]	580	603	0.44
LRR [sensitive, ls]	604	627	0.00076
LRR [sensitive, ls]	604	627	0.02
LRR [sensitive, ls]	864	888	2.1
LRR [sensitive, ls]	864	888	55

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
N [N. glutinosa]	27	629	6e-17
Mla1 [Hordeum vulgare].	30	632	2e-20
RPS2 [A. thaliana]	34	912	4e-88
L6 [L. usitatissimum]	122	666	2e-14
M [L. usitatissimum]	149	608	4e-14
Xa1 [Oryza sativa]	166	608	7e-23
Pib [Oryza sativa].	170	476	1e-13
I2 [L. esculentum]	172	632	2e-27
RPM1 [A. thaliana]	172	619	4e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	32	57

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6134.m00188

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)