Report for 6145.m00151

 > 6145.m00151, length: 1070, copies: 1 

MATLNTQTLITLFLLLLLAAAAAAADAGGGGEREALLRFKAGVASDPGGLLRGWTTAASPDHCAWPGVSCGGNGE

VVALNVSSSPGRRLAGALSPAVAALRGLRVLALPSHALSGQLPAAIWSLRRLLVLDLSGNRLQGEIPPALACAGL

QTLDLSYNQLNGSVPASLGALPGLRRLSLASNRLGGAIPDELGGAGCRSLQYLDLSGNLLVGGIPRSLGNCSKLE

ALLLSSNLLDDVIPPEIGRLRNLRALDVSRNSLSGSVPAELGGCVELSVLVLSNPYTPIGGSNSSDYGDVDDFNY

FQGGIPDAVVALPKLRVLWAPRATLEGELPRNWSACQSLEMINLGENLFSGGIPNGLVECSHLKFLNLSSNKLTG

AIDPSLTVPCMDVFDVSGNRFSGAMPVFEQKGCPSSQLPFDDLVSEYSSFFSYQALAGFRSSSFVLGTDLTSYHS

FAQNNFTGPVKSLPLAADKLGMQGSYAFLADGNNIAGQLQPDLFSKCNSSRGFIVDVSNNLITGGIPVEIGSLCS

SLVVLGVAGNQLSGLIPTSIGQLNYLISLDLSRNHLGGEIPTSVKNLPNLERLSLGHNFLNGTIPTEINQLYSLK

VLDLSSNLLTGEIPGALADLRNLTALLLDNNKLTGKIPSAFAKSMSLTMFNLSFNNLSGPVPANSNTVRCDSVIG

NPLLQSCHMYTLAVPSAAQQGRGLNSNDYNDTSSADSQNQGGSNSFNAIEIASITSATAIVSVLLALIVLFIYTR

KCAPRMSSRSSRRREVITFQDIGVPITYETVVRATGSFNASNCIGSGGFGATYKAEISPGVLVAIKRLSVGRFQG

VQQFHAEIKTLGRLRHPNLVTLVGYHLGESEMFLIYNYLPGGNLERFIQERSKRPVDWKMLHKIALDIAKALAYL

HDTCVPRILHRDVKPSNILLDTEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYG

VVLMELISDKKALDPSFSPYGNGFNIVAWACMLLRQGRAREFFIDGLWDVGPHDDLVETLHLAVMCTVDSLSVRP

TMKQVVQRLKQLQPPIREHR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	126	146	0.11
LRR [Pfam ls]	149	172	0.023
LRR [Pfam ls]	173	196	5.1
LRR [Pfam ls]	199	222	0.0042
LRR [Pfam ls]	223	246	3.2
LRR [Pfam ls]	247	270	0.15
LRR [Pfam ls]	362	382	0.19
LRR [Pfam ls]	526	549	0.75
LRR [Pfam ls]	550	573	0.55
LRR [Pfam ls]	574	597	4
LRR [Pfam ls]	598	621	0.0037
LRR [Pfam ls]	622	645	0.39
Ser/Thr pkinase [Pfam fs]	788	983	3.5e-48
Ser/Thr pkinase [Pfam ls]	788	1062	5e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	126	146	0.0054
LRR [sensitive, ls]	126	146	0.11
LRR [sensitive, ls]	149	172	0.0011
LRR [sensitive, ls]	149	172	0.023
LRR [sensitive, ls]	173	196	0.25
LRR [sensitive, ls]	173	196	5.1
LRR [sensitive, ls]	199	222	0.0002
LRR [sensitive, ls]	199	222	0.0042
LRR [sensitive, ls]	223	246	0.15
LRR [sensitive, ls]	223	246	3.2
LRR [sensitive, ls]	247	270	0.0074
LRR [sensitive, ls]	247	270	0.15
LRR [sensitive, ls]	338	358	0.43
LRR [sensitive, ls]	338	358	8.8
LRR [sensitive, ls]	362	382	0.009
LRR [sensitive, ls]	362	382	0.19
LRR [sensitive, ls]	526	549	0.036
LRR [sensitive, ls]	526	549	0.75
LRR [sensitive, ls]	550	573	0.027
LRR [sensitive, ls]	550	573	0.55
LRR [sensitive, ls]	574	597	0.19
LRR [sensitive, ls]	574	597	4
LRR [sensitive, ls]	598	621	0.00018
LRR [sensitive, ls]	598	621	0.0037
LRR [sensitive, ls]	622	645	0.019
LRR [sensitive, ls]	622	645	0.39
LRR [sensitive, ls]	646	667	0.92
LRR [sensitive, ls]	646	667	19

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	9	886	2e-79
CLV2 [A. thaliana]	32	637	3e-46
FLS2 [A.thaliana]	32	708	2e-73
Cf-9 [L. pimpinellifolium]	63	638	2e-29
Cf-9 [L. pimpinellifolium]	65	682	7e-33
FLS2 [A.thaliana]	74	394	1e-29
CLV2 [A. thaliana]	76	625	6e-38
FLS2 [A.thaliana]	88	1063	1e-91
CLV2 [A. thaliana]	106	664	8e-35
CLV2 [A. thaliana]	126	669	2e-34
CLV2 [A. thaliana]	223	663	4e-40
Pto [L. esculentum]	768	1060	1e-41
Rpg1 [Hordeum vulgare]	778	1062	3e-30
Rpg1 [Hordeum vulgare]	785	1062	7e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	9	31	in -> out
putative TM domain	726	748	out -> in

Report for 6145.m00151

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)