Report for 6149.m00352

 > 6149.m00352, length: 1486, copies: 1 

MEMIGAKHVEAFSDSELIVQQVAGVYKCLDGSLNRYLDSCLDIIANFDNFAIRYIARHDNSRANDLAQQASGYNV

KKGLFLVLEVSMLDFKSLCKIGKTGDQRRSDRGCEACQWFGNVHLAPAAVLNLIIKPLPFRGWALDFIGQIYPSS

SKRHRFVLVATDYFTKWAKAVLLKNMTYMEANGQAESSNKTLLKLVKKNIEEHPKKWHEVLSEAFYIKQDDLSSE

DYKTLMGDNLDEVIDKRLKALEEIEKEKKRVAKAYHKRVKVKLFQVGDLVWKTVLPLGTRSREFDTSRGAFLASN

QREILEEILPERLARRLGGAMAVNTVLQYLPHICIGVFPPVTPSSPIRCSMVGAEMLVAAAVSQVARKINGIVGV

AQGEVKLCCNFSDDLEGIKDTLVYLETLLKNAENNSFGSDRANLRHWLGQIKSLAYDIEDIVDGYYSSKEQFDGG

SYAQKGSLFCSLSNPMLLKGSMVYKMKSKREMLQQRQQLPNQYHFLSHINSAVNFEEKQTTSYRNTDIAIVGRDA

DLDNLMDILMENSAEELSIISIVGPVGFGKTSLAQFVFNNTGTEVIGVDLGQRRIGTRLREELRSKAIKDAGEAK

PIQPFLVAQDDGWISRQGGQAEQAQDKTTAHGIGTMRGQAREIARGTRAQWTRGGKEFGACGRGVHAVSSGSEAG

VVLGPTRDFASMRGSSSAGRVEALDWMRADPASLIAAVLNDAERSGASEEMLHMHNLAHDLARSVAGEDILVILD

AENERNARYCDYRYAQVSASSLESIDRKAWPSKARSLIFKNSGADFEHVSEVLSVNKYLRVLDLSGCCVQDIPSP

IFQLKQLRYLDVSSLSITALPLQISSFHKLQMLDLSETELTELPPFISNLKGLNYLNLQGCQKLQRLNSLHLLHD

LHYLNLSCCPEVTSFPESLENLTKLRFLNLSGCSKLSALPIRFLESFASLCSLVDLNLSGFEFQMLPDFFGNIYS

LQYLNLSKCLKLEVLPQSFGQLAYLKSLNLSYCSDLKLLESFECLTSLRFLNLSNCSRLEYLPSCFDKLNNLESL

NLSQCLGLKALPESLQNLKNLQLDVSGCQDCIVQSFSLSTRSSQSCQRSEKAEQVRSRNSEISEITYEEPAEIEL

LRNNPSKDLASISHLNEDRIEEPEVVTESSATRGMVQQIPGNQLSSPSSHLSSFASSSAPFASSSWDTSTSEHPV

PNEEAAALTVPRSNEKCDNTPMPVKDGLISEDDAPVHFGRFLKKNGFGGGSEAEMLPMQMQGTCTTVAPEVRLDK

QLQAWKNNPIWSDEPPEIKVTVPQGSLCNLNLKFKAGLPPDAVYNIIIDPENKRVFKNIKVKFKQGRTGFMKKFE

GCWKIEPLFVDKEACHPLDPCTLEKYDSCTNGTGRVGSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDL

IAETARLRGLANNAIDKQYVEGKCDTSRDHLTEECNDIKERWRQRRKTGRHGNSLRLTAQG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	520	564	3.1e-09
LRR [Pfam ls]	808	830	0.069
LRR [Pfam ls]	831	853	4.3
LRR [Pfam ls]	854	876	0.0055
LRR [Pfam ls]	900	923	0.075
LRR [Pfam ls]	924	948	0.13
LRR [Pfam ls]	975	998	0.16
LRR [Pfam ls]	999	1021	3.5
LRR [Pfam ls]	1022	1045	0.021
LRR [Pfam ls]	1046	1069	0.027

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Integrase core domain [fs]	130	177	0.0027
LRR [sensitive, ls]	808	830	0.0027
LRR [sensitive, ls]	808	830	0.069
LRR [sensitive, ls]	831	853	0.17
LRR [sensitive, ls]	831	853	4.3
LRR [sensitive, ls]	854	876	0.00022
LRR [sensitive, ls]	854	876	0.0055
LRR [sensitive, ls]	877	899	0.21
LRR [sensitive, ls]	877	899	5.5
LRR [sensitive, ls]	900	923	0.0029
LRR [sensitive, ls]	900	923	0.075
LRR [sensitive, ls]	924	948	0.0052
LRR [sensitive, ls]	924	948	0.13
LRR [sensitive, ls]	952	973	2.7
LRR [sensitive, ls]	952	973	68
LRR [sensitive, ls]	975	998	0.0064
LRR [sensitive, ls]	975	998	0.16
LRR [sensitive, ls]	999	1021	0.14
LRR [sensitive, ls]	999	1021	3.5
LRR [sensitive, ls]	1022	1045	0.0008
LRR [sensitive, ls]	1022	1045	0.021
LRR [sensitive, ls]	1046	1069	0.0011
LRR [sensitive, ls]	1046	1069	0.027

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	720	1134	5e-13
N [N. glutinosa]	768	1112	3e-12
RPP5 [A. thaliana]	779	1064	4e-17
RPM1 [A. thaliana]	797	1072	9e-13
RPP5 [A. thaliana]	818	1078	6e-17
RPP5 [A. thaliana]	824	1078	7e-12
RPP5 [A. thaliana]	840	1072	5e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Domain of unknown function DUF220	1319	1416	6.4e-23

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	234	254

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6149.m00352

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)