Report for 6149.m00353

 > 6149.m00353, length: 996, copies: 1 

MATAGAAVDRLLRRLAADAGRLKLPSSIDEDMAQVRRTLARLQDVLLSVEGKYFKMSMEAQEWMRKINQISYDIQ

DLLDEFEDCSEAGSQRGSSWIAKEILLCSSSPCFFNSSRLQRIRIIKRKLDLSTEDSVVLSLMQHSPSNLKHCNE

PVIFDGYKILGRDNDRENVKNLLFQNDADKFSIIPIVGLAGIGKTALARLIFQDYGEEWNFDQRIWICIDRKLEL

NKIANDIISQVNKKEETISEFVLNDQIHNNLQFMKNRLQEVLSDKSSLIVLDGLISTDKNQLIELKEMLRGTEKC

TKIIVTTSSEVSADLIGTVPSYKLHPLSDDDCWGIFCQRAFDNGAGNMDRAEIGRQIVKRCEGIPMAAYSLGSMM

RNKDDNAWLWARDKEIWELPKVFANGFELLAPFSEIYHRFVIDREKLIQQWIALDMVGSKHGALPAYVHGEMFIQ

ELLSLFFLEIQKIPSVVKRPKMIPGCLIAIAVRRKYGILVILSFMFFPFYVCSWCVVRNLLMMIDDYSSSHAKCG

RYSNTQLPVQKPVSATGISPTNRRTLLQVNSLVHAFAKYVAGSDIVISDGRELSRGPSAEKVSSTYAVLINHTGH

STLQKDVLTGARAISFKNCLLADAFLRLNHLRILDLTCCYDLELPASIGYLKLLRYLAGFGLRIRKLPNQMSSLQ

NLEALDFSESHLEELPSFIGSYQKLTYLNLQRCEKLRNLPRTLGDLKRLEYLNLSYCPGVSEDADYLCSLHALRF

LDLSGCSELQQLPHLFGNLTNLEDLNLSGCFRLERLPLPDSITGLVNLQYLKLSHVISELPESLSKLERLHTLDL

TGYRLPLSSGVPPTLADIIRKMPNLNIMLRDRYGVEMSCSSISTGGNGRGLPLNLKNKKIVVLQFQIYVHHNIRC

STDNANLVTEETSDERVTLRKIRSLHDLGDLHDIHHLESHEKIEEMQEQARQLVASSRLDEWGIFARINYLPYTR

IIKACIRFKARRHHPTKLEVT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	143	277	2.9e-11
NB-ARC [Pfam ls]	143	437	7.6e-14
NB-ARC [Pfam fs]	302	379	1.8e-09
LRR [Pfam ls]	699	722	0.26
LRR [Pfam ls]	747	770	0.0041
LRR [Pfam ls]	771	793	2.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	630	655	0.55
LRR [sensitive, ls]	630	655	14
LRR [sensitive, ls]	676	698	0.21
LRR [sensitive, ls]	676	698	5.5
LRR [sensitive, ls]	699	722	0.01
LRR [sensitive, ls]	699	722	0.26
LRR [sensitive, ls]	723	746	0.4
LRR [sensitive, ls]	723	746	10
LRR [sensitive, ls]	747	770	0.00016
LRR [sensitive, ls]	747	770	0.0041
LRR [sensitive, ls]	771	793	0.081
LRR [sensitive, ls]	771	793	2.1
LRR [sensitive, ls]	797	818	0.78
LRR [sensitive, ls]	797	818	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	2	469	7e-32
Mla1 [Hordeum vulgare].	23	751	1e-15
Pi-ta [Oryza sativa]	63	367	2e-11
Xa1 [Oryza sativa]	150	821	1e-26
RPM1 [A. thaliana]	152	779	3e-19
Pib [Oryza sativa].	158	437	2e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	486	508	in -> out

Report for 6149.m00353

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)