Report for 6158.m00163

 > 6158.m00163, length: 724, copies: 1 

MRGGTVRRGGGVGLRALVVVAVAAAALVVARADTAAADGENICIGYASNSRMDTFNCHTDEQLNIMKGVGYDHRK

GIITMNAANLGGQLGGLGNFTSIVTINLSNNKIGGTIPEDLPVTLQHMSLNDNQLNGQLPDAFGSLTGLVNLDIS

SNNLTGVLPPSMKNLSSLTTLNIENNLFSGPVPPKLQSIPNFKKDGNPFNTSIAPSASPPSTPGGPAPTPTPTRP

APSPSPTGPPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDGPTTRDNISSSKKQNSSTLKIVGFVFLGVVLFIV

TVLLVIFCLSKYQERRSRYDYNRSQLARVHHTVEHRINPSIVQPRDDAKKDQQSLAAVPKKPLESQREHIIDLEH

PNNLARTNSELFAVDPPPPPPPPFLPPFPVEKVTVNPVVPPEKRYISPPRINKPTSATSFSVASLQQYTSSFREE

NLIRKSRLGKVYLAEFPEGKFLEVMKIDNTNGRISVDEFLDLVQLVSDIRHPNIHELVGYCAEYGQRLLVYNHFS

TKTLDDALHDREGVDSTLSWNARLQVALGSGKALEYLHESFQPPIVHQNFEPANVLLDNKFSVRVAECGLEKLLA

SSSVTQLADRMHSLLNYEPPEFRESGIVTEQGDVYSFGVVMLEILTGRKPYDSSLPRAEQHLVRWANSQLHDIES

LSRMVDPSIQGQCSEKALSRFADIISGCIREPQFRPPMSEVVQDLARMT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	97	117	0.25
LRR [Pfam ls]	119	142	0.24
LRR [Pfam ls]	143	166	0.12
LRR [Pfam ls]	167	190	3.9
Ser/Thr pkinase [Pfam ls]	452	722	1.7e-10
Ser/Thr pkinase [Pfam fs]	493	591	0.0012
Ser/Thr pkinase [Pfam fs]	629	656	0.0016

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	97	117	0.011
LRR [sensitive, ls]	97	117	0.25
LRR [sensitive, ls]	119	142	0.01
LRR [sensitive, ls]	119	142	0.24
LRR [sensitive, ls]	143	166	0.0052
LRR [sensitive, ls]	143	166	0.12
LRR [sensitive, ls]	167	190	0.17
LRR [sensitive, ls]	167	190	3.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	63	183	5e-15
Xa21 [O. sativa]	77	183	3e-11
Xa21 [O. sativa]	78	189	4e-13
Xa21 [O. sativa]	92	190	6e-11
Xa21 [O. sativa]	96	189	5e-13
FLS2 [A.thaliana]	97	183	4e-12
Rpg1 [Hordeum vulgare]	393	651	2e-19
FLS2 [A.thaliana]	422	723	3e-24
Pto [L. esculentum]	435	720	8e-33
Rpg1 [Hordeum vulgare]	435	671	4e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	29	in -> out
putative TM domain	12	29	in -> out
putative TM domain	76	98	out -> in
putative TM domain	76	98	out -> in
putative TM domain	287	309	in -> out
putative TM domain	287	309	in -> out

Report for 6158.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)