Report for 6171.m00022

 > 6171.m00022, length: 1058, copies: 1 

MGGDGDPPHLVFFLPDHVLVFLLSDPGISILSAPARLPLEATASTGAHADRRCSRSIPLRPPPALPDLLGACFCV

DEGRKTPKTLIFPRDERNASSVCRCCREVGVRYKAANDIQELNKKLERITPTLLQELCREDRQSNITTPQHDEFI

TIGRNIANECDNLFRLLRGNQAGQCLFAIVGAVGVGKTTLAQKIYHDTKNNFRTRLWVHVSNDSRNLGIWRGESF

LGTGETAVQRVVLREYLINDRYRRLLLVIDNVWEENGWNQFLGQDFCRGGDTVLLVTTRHECVARTMGIARCHRI

RRLSEDDGWLLLRTTANLRETEATGNIQDVGRRIVQKCSGLPVAVRTIGYHLRGKTLEDEWESVYLEDFVATYPE

IRNSIDASYMKLSYRLKRCFLYCSLYPEGNVIEKQCIMQQWIAEGFFSEVPLQVQEEEAERCYQELIDRCLLLPE

DEAHGVTGAKMLNLFRSFAIYRSQDENYVSNPRNIGRNFKPWRLCVTNGGRVEDIPDDATSLRSLFLFGSPQING

KSLEFIFSKLTSLRVLDLRHTQVDNISTYLKKLHKLKQLRYLNLSNTRISSIPASIGSLTMLQFLILKNCPLLES

LPRCVGHLKKLRSLDISGTPMLNVIQFNLLELTELNCLQGFVPTTSVQQNNNGDGWKFEEVRPLGNLRNLQMVKL

ERASSSRGDLGQLNLHEKPNLKELELCCSSADPQNRDRDAEHIKAVFEALKPAQCLVSLKIANYYGDQFPSWFSN

SHLTVLQRLTLDLDDCLPSWDLPPLGQMMNLKFLKITASNLLPDANNRQLRGEPRNGKAFPRLEQLVLGKMESLA

PWSVLQEGDLPLLRVFHLDGCSQLNSIPSWLQSCSKLTSMKIKNIDTLQEIASLPSLKELEVHNSGRLQTVLNIR

RLEDLTISDCPVLAAVDGVPLLCSVHIKEQSAQLPQWLQQKSFVLRRLDIIGTEVLLDRCSSPIAQYGSIIQAAA

EHVYAKLVDGSFYFSYNKSTSSFQRSRRCIERLTVDGLHNNAVPPDNWRAWMVYTLYAILVIASSFLFSGLLRPM

DETPQHPQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	135	427	4.1e-37
NB-ARC [Pfam fs]	178	427	2e-40
LRR [Pfam ls]	537	559	4.1
LRR [Pfam ls]	563	585	0.0011

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	511	536	0.58
LRR [sensitive, ls]	511	536	15
LRR [sensitive, ls]	537	559	0.16
LRR [sensitive, ls]	537	559	4.1
LRR [sensitive, ls]	563	585	4.1e-05
LRR [sensitive, ls]	563	585	0.0011
LRR [sensitive, ls]	586	609	0.63
LRR [sensitive, ls]	586	609	16
LRR [sensitive, ls]	610	633	0.3
LRR [sensitive, ls]	610	633	7.8
LRR [sensitive, ls]	837	860	0.24
LRR [sensitive, ls]	837	860	6.2
LRR [sensitive, ls]	881	903	0.6
LRR [sensitive, ls]	881	903	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	102	614	1e-33
Xa1 [Oryza sativa]	111	927	2e-39
I2 [L. esculentum]	142	910	2e-54
Pib [Oryza sativa].	147	612	6e-26
Pi-ta [Oryza sativa]	152	655	3e-22
RPS2 [A. thaliana]	176	616	2e-31
Mla1 [Hordeum vulgare].	178	675	3e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1025	1047	out -> in

Report for 6171.m00022

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)