Report for 6174.m00132

 > 6174.m00132, length: 854, copies: 1 

MAEAAVVLALGKLVTSFGVSSLRTYLEKEPARLPDLPYTAKHIERELDMIHHFLSQVGTKIYSNKVLEGWIVRVR

KVAYRVEDITDEYSYNIALEHENHFKRLIHKFFYPTAFHRIAIELKDIEEEIKHLSQLKRDYREMFNELLDNTSD

SAHIHLLSSNGSPHAVKGDDIVGMKEDMELLGRWLDPKELDRTVISIWGFGGLGKTTLVRKVYDWEKGMKSFDCY

SWIAVSHNYNINAILRQLIQELSEDQSKIPTDLDTMHHEMYKMKLNPLGNDDAFELFHRRCFQKSNMECPSHLEE

LSRQIVNKCGGLPLAINAIGNVLAVQESKEIVWRRINNQFKCELEDNPGLDKVRSALSISFMYLPRHLKNCFLYC

SMFPQDYIFKRELLIKLWIVEGFVIQRGQSTLEEVADGYFTELIQQSMMQLVENDEIGRVVSCRMHDIMRELALS

FSRKERFGLADINLETQKKDDVRRLLVSNFDQVNQLIKSSMDLPRLRTFIAANRVANYQLLTLLISRCKYLAVLE

LRDSPLDKIPENIGDLFNLRYLGLRRTRIKSLPISIKKLTNLETLDLKSTNIERLPREVAKLKKLRHIFAEQLYD

PEERQLRYFRGVKLPDCAFDLAQLQTLQTVEATKESVKLLKYLPELRLLCVENVCRADCATLFSSLSNMNHLYDL

VISANDLNEPLDFNAFNPICTKLEKLTIRGCWDNETFRRPVFCEYGANIKYLTLTFCKNDTNPLPSISSSVPNLI

FLSIRRGCWAEDIILRAGWFPQLRTLWLGKLEELRRLVIEEGAIIRLEVLLLLSLPSLREVPKGLELLASLKKLN

VTMQHHELKVEWERDNWKTKLHRIQEIRF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	159	404	1.1e-33
NB-ARC [Pfam fs]	169	250	1.7e-12
NB-ARC [Pfam fs]	266	404	5e-39
LRR [Pfam ls]	543	565	0.64
LRR [Pfam ls]	566	588	0.35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	520	542	1.1
LRR [sensitive, ls]	520	542	23
LRR [sensitive, ls]	543	565	0.031
LRR [sensitive, ls]	543	565	0.64
LRR [sensitive, ls]	566	588	0.017
LRR [sensitive, ls]	566	588	0.35
LRR [sensitive, ls]	671	692	6.5
LRR [sensitive, ls]	671	692	130

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	10	270	2e-16
I2 [L. esculentum]	41	755	3e-42
Pib [Oryza sativa].	49	311	5e-11
Mla1 [Hordeum vulgare].	70	680	2e-43
Pi-ta [Oryza sativa]	70	571	6e-33
RPS2 [A. thaliana]	171	812	1e-33
RPM1 [A. thaliana]	252	852	5e-69
Xa1 [Oryza sativa]	268	818	1e-20
Pib [Oryza sativa].	270	600	2e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	118	144

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6174.m00132

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)