Report for 6185.m00129

 > 6185.m00129, length: 1053, copies: 1 

MAELRLLTFKVEHLLEELRWEAQHNKALVDGHRNRMMRNMYIPLVLPRSMKRKLKMITGQLNALGAEINGFINHV

PLVMQNNIVGRVHEKQEIKQKLFCLDRYKHEGLKVLCVVGIEGVGKTALVQLIFDEVNVKEYFSLCIWVNVSRQF

DAMRITKRIIEVATCEPLETQMDHKEEKELQSYLQNILHERRFLLVLDDVCDENTNGWEELRTSLASGASGSTVI

VTTRELCVARTLEAPASGIIELGPMSDDEIWSIMRQRMLCGLDDKPELIQVGQSLVQKCHGIPLAAVTLGDLLRK

KGTSNEWSSVIEAANEWLALAESDMLTTTAGVASVALQMSYEHLQPDTKRCFAFCALFPEAFEVDGDMLIQLWMA

NDMVWYDTEGMGAWMLDRLQSRSFLQDVSQPYNGVTIYKMHPLVHGIATSAAGKEIRILHQGHQLTEVMPELHHL

SVVGSGLDVDMILPNAWGIHTLLSQGEGCRISVSNPDFWKSNSLRALDLHGLLSASVPFSCQDMKHLRYLDLSRS

WITSLPEDFFMIYNLQTLRLSDCFYLKQLPENMRFMENLRHIYIDGCFRLENMPSNMGQLQNLQTLTTYIVGNGD

GYGIEEIKSMDLGGRLEIYNLKNVRDKSKAEAANLSLKTRMSNMLLCWGMFRNDEVNAYNAEEVMEALRTPMCVQ

TLKVWRYPGSILPIWWPGQTLANLVKLTIKDCARCKRLPPVQYFPSLEVLHLEGMDSLTLFCDNVSMDNIEVSYY

RFFWRLKSLILCDMPSLEKWQEDEVIEVFTIPVLEEMKLINCPKLVTIPNVPMLRCFIVEGQNKQQLYSLAPSSS

KSKGPSCRIYMASNAGKKLIQIDVSSDTVCPWCFVGKKNLEKAMEQNKDKFDFEVRWHPFFLNPNAPKEGIKKSD

YYRMKFGPIQFEHATARMTEIFRGLGMEYDMSGLTGNTMDSHRLITLAGHQGYDKQSALVEELFQSYFCHGKFIG

DRQVLLDAARKVGIEGAEELLQDSNKGVDEVKEELNKYSSGISGVPHFVINGKFQLSGGQPPNAFTRAFDVAAKD

GAQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	67	384	1.8e-52
NB-ARC [Pfam ls]	67	384	2.4e-52
LRR [Pfam ls]	516	535	0.65
LRR [Pfam ls]	539	559	1.2
LRR [Pfam ls]	563	586	8.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	516	535	0.021
LRR [sensitive, ls]	516	535	0.65
LRR [sensitive, ls]	539	559	0.04
LRR [sensitive, ls]	539	559	1.2
LRR [sensitive, ls]	563	586	0.26
LRR [sensitive, ls]	563	586	8.3
LRR [sensitive, ls]	698	720	1.9
LRR [sensitive, ls]	698	720	61

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	3	795	1e-80
RPS2 [A. thaliana]	65	806	7e-29
Pib [Oryza sativa].	80	568	2e-25
Xa1 [Oryza sativa]	83	793	5e-59
Mla1 [Hordeum vulgare].	101	591	3e-25
RPM1 [A. thaliana]	110	751	8e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
DSBA-like thioredoxin domain	846	1045	1.1e-40

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	989	1013

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6185.m00129

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)