Report for 6188.m00173

 > 6188.m00173, length: 950, copies: 2 

MGKLFMVLENQYNKHKVLEQEISSLQQEFRMIAAVMDDQLLSMGRSEARTSVAWLHNEEMLDLEHDIEDCVDRFM

HLLTCKHHRGGVRQMAHEVKIRSSFSEEIQKLRRRLSEVRHLVGIRQPMEELLSLLDEVEGEPKQLRVTSIVGFS

GLGKTTLAKAVYDSPHAKDKFCLRAWITADGSPETSNWMKEILRGVLQQVRPGDAMDVDGQHLEASLKEYLKDKR

YLIIIDDIRMDQWRIISSAFENNGTGSRILLTTTIQSVTNRCSHGNGYVYQMNTLGKEDSEELAFSVLRSPELEN

HSESLLGKCDGLPLALVSVSDYLKSSTEATGELCAKLCRDLGSHLTGNHGHDNFSELRKVLLGNYDSFSGSALSC

LLYLGIFPNNHPLRKKVLIRRWLAEGNARSDDPWRSEEDTADDNFSNLIDQNIIQPVDTRNNSEVKTCKTHGIMH

EFLLNRSLAKRFITTSPHDPRVGINTTNSRHLSVDAAKQTKCMASDEELSRVRSLTIFGDAGDAISYLHKCNLIR

VLDLQECSDLNDNHLKRICVLSPWHLKYLNLGGNISELPRSIEGLHCLETLDLRETEIKFLPIEGIMLPHLAHLF

GKFMLHKDDLNNVKKISKLLKLFSSNKSNLQTLAGFITDGRKGFLQLIGHMKKLRKVKIWCRHVEGSSNYIADLS

KAIQEFTKAPIDMDRVRSLSIDSEEYCEKFLSSLDLEPCSEYSKYHLSSLKIHGKLLRLPPFFSSLSGLIDLCIT

PATLTQDHLSALINLNRLLYLKLIADKLENLEIKHEALLSLRRLCFVVKSVALAQPKIEQGALPNLVSLQLLCQG

LVGLSGIEIRHLKNLKEVTIDSGVTAQTRQDWEQAAKNHPNRPRVLLLGKVDPVESEEPGRPCAIRGRGKSSIGQ

ESSEDGSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMANL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	106	408	3e-29
NB-ARC [Pfam ls]	106	408	5.4e-28
LRR [Pfam ls]	550	571	3.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	523	547	6.9
LRR [sensitive, ls]	523	547	76
LRR [sensitive, ls]	550	571	0.32
LRR [sensitive, ls]	550	571	3.5
LRR [sensitive, ls]	572	595	1.9
LRR [sensitive, ls]	572	595	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	843	3e-47
Mla1 [Hordeum vulgare].	3	674	9e-62
Pib [Oryza sativa].	22	599	5e-46
I2 [L. esculentum]	48	640	3e-32
RPS2 [A. thaliana]	114	591	2e-12
Pi-ta [Oryza sativa]	117	635	4e-46
Xa1 [Oryza sativa]	141	578	3e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	8	28

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6188.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)