Report for 6188.m00176

 > 6188.m00176, length: 928, copies: 1 

MASAAASAFLEAVMGKLFMVLDKEYNKHKALEQEVASLQQEFRMVAAAMDDQLLSMGRSDAHARTAVARLHAEEM

LDLEHDIEDCVDRFTHLLTCSHSNPSGRTSLVCRVKHEVKKVQSRSSFSEEIQKLRRRLSEAQQRVISNIINPNP

PPSGFEPRSSSSTPARAACGPPVGIGEPMEELLSLLDEVEGEPEQVRVISIVGFGGLGKTTLAKAVYDDPRTKEK

FYHRAWIAAVGSPETSDWMRGILRDVLRQVRPGDAMDVDGQHLEASLREYLKDKRYLIVIDDIDVDQLRIIESIF

PDNGTGSRIIVTTDNQQVANTCSHGNGYVYQMKTLGKEDSKKLAFSGLRSVEPGQGPASLLAKCDGLPLALVSVS

DYLKSSSEPTGELCAELCLNLGSDLKEDGHYSFAQLRKVLLDNYDSFSGYTLSCLLYLGIFPNNRPLKKKVVIRR

WLAEGYARSDDPRRSEEYTADKNFRKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHP

RVGINTSNARHLSVDAAKQTECVASDEELSRVRSLTIFGDAGDTISCLRKCKLLRVLDLQECNGLNDDHLKHMYE

LWHLKYLSLGGYINELPRSIQGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHKDDLKNAKKMSKLQKF

FSSNKSNLKTLAGFITEEGKEFLQLIGHMKKLRKVKIWCKHVEGSSNYIADLSKAIQEFTKTPIDMDRVRFLSLD

SEECSENFLSSIHLEPCSEDYKYTLKSLKLHGNLLQLPLFVTLLSGLIELCISSATLTQEHLSALTNLNSLLYLK

LVADKLENFEIKLGAFLSLRRLCFVVKNAASALPKFEQGAMPNLVSLQLLCQGLVGLSGDRPSASGGGNGHRSSI

PAFHGKLISSTFIQFRQMDFNKDYNIKV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	153	374	2.9e-26
NB-ARC [Pfam ls]	153	462	4.1e-27

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	6	879	3e-44
Mla1 [Hordeum vulgare].	16	850	6e-65
Pi-ta [Oryza sativa]	66	649	3e-48
Xa1 [Oryza sativa]	119	701	3e-20
RPS2 [A. thaliana]	173	644	3e-14
Pib [Oryza sativa].	173	652	1e-49
I2 [L. esculentum]	179	688	5e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	20	42
putative coiled-coil	121	141

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6188.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)