Report for 6192.m00197

 > 6192.m00197, length: 970, copies: 1 

MERASVIGGTMVSLMVKLSSIAGPRYSLMAGARSDVIFLGAELESMHAFLEKLSGVDGPDPQVRCWMKEVRELAY

DVEDCIDEFMHRVDVVHGAVTSNHGFSSLRGLVSHATRLVAVAWMHHRLASELKGLKARAIEVSERRSRYKLGDD

IGMLGGSAMATDPRVSVLYADTPDLVGIDRPASEMVNWLTDDVCTLKVLSIIGFGGLGKTTLAMEVYRRVGGQYS

CKAFATVSQKLDTKKLLKDLLSQIAQNEVDHMGTWEEGQLIRKLRECLLNKRYFIIIDDVWSKSAWEKVRCALPE

NNHCSRLLTTTRIDSVAKSCCSHPDDLIYRIEPLKASDSRNLFFKRIFGYEDVCPPQLKEVSDQILKKCCGSPLA

IISIASLLASKPVMLKEQWEKVLISIGSALEKNSDLEGMKQILSLSYYDLPYYLKTCLLYLSLYPEDFKIERDSL

IQQWIAEGFIGEERGQSVEDVAESYFNELINRSMVQPMDINCDGKAHACRVHDMMLELIISKAIEENFVTLLGGH

PVAAKPQGITRRLSIQCDKEITKTKGGMNLLHARSLSLYVQACQLPPLSDFRVLRVLNLEGCLGLCDNHLKDISI

LFHLKYLSLCRTWISKLPPEIGDLHSLETLDIRDTNIEELPGTIIRIVQLKYILSGGHTWGKIKLPDGIGSMASL

RVISGFNICCSSTNAVQELGTLKGLRELTINWTDFSSGDMKRQEAMMNTLGKLGTSNLQSFAICSRNFGSLEFLD

SWSPPPNHLQRFRLSAYYFLPRVPRWMASLCNLIHLNINIEKLSNEDIQILQDLPSLLHLDLWLKSPQKEDKIVI

HGVGFPYLQELIFSCEGTSLIFEPAALPKLERLQMAVHVKEAKSYGYQFGIEHLRSLKKIYIQLLCAGASALDIK

DAEDAIHTIVKFHPGHPRIDIQKCGMDMHLEERNKRQHPEETNVQNMNASKEDMNHANKKRKEYQSSSAQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	465	5.5e-63
NB-ARC [Pfam ls]	159	465	2.5e-63
LRR [Pfam ls]	603	625	0.39
LRR [Pfam ls]	626	649	3.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	603	625	0.035
LRR [sensitive, ls]	603	625	0.39
LRR [sensitive, ls]	626	649	0.31
LRR [sensitive, ls]	626	649	3.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	6	922	1e-147
Pi-ta [Oryza sativa]	27	704	1e-100
RPM1 [A. thaliana]	28	887	1e-70
I2 [L. esculentum]	43	812	2e-44
Pib [Oryza sativa].	46	419	3e-13
RPS2 [A. thaliana]	122	635	1e-24
Pib [Oryza sativa].	164	889	6e-77
L6 [L. usitatissimum]	168	422	4e-11
M [L. usitatissimum]	171	439	1e-11
Xa1 [Oryza sativa]	196	735	6e-36
Pi-ta [Oryza sativa]	768	914	5e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	945	966

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6192.m00197

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)