Report for 6201.m00154

 > 6201.m00154, length: 931, copies: 1 

MAGLFASMAIEGALDSLSSLLQLQANNPTPPPATTAAVPPAETSHALENTREKSANLRLEEIKELAYDAEVEATA

AQGGDGASSSSSSSRKRKIHKVHDEDYFIEAGIIPVPKELTVRARKVIQRFGEIEGYYGSFTLSENDGDRRIIPD

INSLRQTSSFVFAPIIVGRDQDKENVIKKMMTLEGSRIGGCMSVLAIVGMGGLGKTTLAQLVYNDPKNEQSDYWK

SLCMPIFASTRCDIIVTTRSEAVASWLLFKQTAFVEHDNVSPANLVEIGQRIAKKCQGLPLALKTLGSVLRFETN

VMKWRDVLQSELWDLERSQNEVLPALELSYKHMPMHLKLCFVSLSLYLKDTYFDESIVVWLWKSLHLLQCDGTDN

SNEIGGLYFTQLVQRSLIQQVDTHGRMAIHDLVHDLACFLAGEEFFRLEEDGYVEIPKGARCMSIMPHPQCKRST

QISNASQSLRVIILIRRINIKNPEALFMNCKKFQIIQVIDDSFANVLLDFMGDMKLLRHFRLIRSCNEVKLVISD

SMSQQFNLQTLNCEAYSLHGIGRLANLQNLPNIHLWKCGCYLRELRNMNKIRRLHIYGLCNVSSIQDVNEAHLHS

KKDLEILELDFESGGICKVHKEEADVNQAISTVSGGSILESLRPHHQSLKVLRMKNLNEVNYPSWLGSASFSKLT

KLRLENCQSQHLPTLGELPSLKSIDIRQMEYVENIGRVFCSLDPSVKGFRSLAHLRFQDMNRFSEWSEVHDGEFS

SLETLLIWSASELSSLPSVPFSSLRSFELCDCKNLVTFPASATLQILSISSCEKLKELPALPSLRSLKLSGCESL

VAVGHFPSLTVLHMSTEFEEEVLHKLMNLHLKLEELSISSDTMKLINLEPHSLPLLRELELVCPNLQNCDALASL

SSLEILCVNRCSPQLRVPNSLQSQLEKLYSP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	216	7.4e-14
NB-ARC [Pfam ls]	150	373	1.4e-17
NB-ARC [Pfam fs]	250	350	9.4e-30
LRR [Pfam ls]	813	835	2.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	532	553	7.6
LRR [sensitive, ls]	532	553	84
LRR [sensitive, ls]	575	599	5.3
LRR [sensitive, ls]	575	599	58
LRR [sensitive, ls]	673	697	5.4
LRR [sensitive, ls]	673	697	59
LRR [sensitive, ls]	751	775	1.4
LRR [sensitive, ls]	751	775	15
LRR [sensitive, ls]	793	812	3
LRR [sensitive, ls]	793	812	33
LRR [sensitive, ls]	813	835	0.25
LRR [sensitive, ls]	813	835	2.7
LRR [sensitive, ls]	857	882	5
LRR [sensitive, ls]	857	882	55

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	211	892	8e-61
Xa1 [Oryza sativa]	211	911	1e-35
Pib [Oryza sativa].	222	579	3e-13
RPM1 [A. thaliana]	234	578	2e-13
Mla1 [Hordeum vulgare].	272	715	3e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6201.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)