Report for 6201.m00161

 > 6201.m00161, length: 1010, copies: 1 

MAVKWALDKLSSLMVPERIIPVAFSSSSSISQGMMDLRVLERTMQRIHATLVDAEEHWNIHEETAKLRLKELKEL

AYGAQDVVEEYEYEVNRCRPEDPDRYACNGSKRKRHQVNGEHLSEVGLVPVSNELATKARELIQRFDEMKVYYKY

FSISDNDGVRRTAPGIECVRPTSYFVVKESIVGRESDREKVIEKLMFGEGSNVASHLSVLAIVGTGGLGKTTLAQ

LVYNDQTMCQSFDVRAWVYVSDHFEPKSLMEKIAVSIEELSNELSSPKENSKELSELVDPRNKLVKKIKGKRIFL

VLDDVWNERMDCWEAFQDPMLAAQQCKILVTTRNLPVARLVQTMPHYSMNHLSPQESWTLFKRTVTTPENAIQGN

LVDIAKKIVEKCDRLPLAIKTLGSMLRYETHESRWIDILESDLWDLDKAQSEVLPALKLSYKNMPVHLKQCFLAL

CLFPKGRLRGKSEVIWLWKLLDMLKDDERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDLACHLSGNEFF

RLEGDKPVQIPENTRFMSIHNCDTSVQFSVTSHPLWAIIVFGVKNYSRVNNPEHFFLYCKNLRVLSLSYSNIGKA

LPRYISGLKLLRRLELPLDGDYLKLICNLGPTDRVDYLKELECAPNGIGNLINLHTLRDIRIRRCGCSFNLSELK

NLNKLRELRIRGLGNLSHTEDANEVQLVSKKHLHLLELNFSDEKECQKEQCQQLLQQYEKVSHEQLELDFTFEEG

FKKFRYQSVQQLEYVTVSHNEILESLRPHEGLINLIIEDYDCQSYPNWLGNASFSRLTVLVISARRKWVRQQRVP

TLGELPALKSLKISSMYYLEHIGREFCSHAPGIKGFPSLTSLEFSYIPWWNEWTGVDYGDFPLMETLSLRTVYKL

RALPLDRFPSLGTLTLDECDGIDTIPAGGTIKKLCIGGCYGLYTLPTQSSLLKLQLKDCPRLSVVSSMPELDTLE

IFKCPKLTAVGFMPKLQTSNIQHCRNLITIDSMHD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	165	479	6.4e-64
NB-ARC [Pfam ls]	165	479	2.6e-64
LRR [Pfam ls]	586	609	0.35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	586	609	0.032
LRR [sensitive, ls]	586	609	0.35
LRR [sensitive, ls]	656	678	6.4
LRR [sensitive, ls]	656	678	70
LRR [sensitive, ls]	761	783	8
LRR [sensitive, ls]	761	783	88
LRR [sensitive, ls]	832	856	5.6
LRR [sensitive, ls]	832	856	62
LRR [sensitive, ls]	950	975	4.6
LRR [sensitive, ls]	950	975	51

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	18	684	9e-37
I2 [L. esculentum]	37	1002	1e-82
Pi-ta [Oryza sativa]	62	545	2e-21
Mla1 [Hordeum vulgare].	66	685	3e-40
Xa1 [Oryza sativa]	105	818	2e-57
N [N. glutinosa]	154	519	8e-12
M [L. usitatissimum]	173	528	3e-12
Pib [Oryza sativa].	178	528	4e-23
L6 [L. usitatissimum]	179	468	4e-13
RPS2 [A. thaliana]	179	642	2e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6201.m00161

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)